:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rapmap' .. highlight: bash rapmap ====== .. conda:recipe:: rapmap :replaces_section_title: :noindex: Rapid sensitive and accurate read mapping via quasi\-mapping :homepage: https://github.com/COMBINE-lab/RapMap :license: GPL :recipe: /`rapmap `_/`meta.yaml `_ .. conda:package:: rapmap |downloads_rapmap| |docker_rapmap| :versions: .. raw:: html
0.6.0-50.6.0-40.6.0-30.6.0-20.6.0-10.6.0-00.5.0-0v0.2.1-2v0.2.1-1 ``0.6.0-5``,  ``0.6.0-4``,  ``0.6.0-3``,  ``0.6.0-2``,  ``0.6.0-1``,  ``0.6.0-0``,  ``0.5.0-0``,  ``v0.2.1-2``,  ``v0.2.1-1``,  ``v0.2.0-1``,  ``v0.1.0pre-3``,  ``v0.1.0pre-2``,  ``v0.1.0pre-1`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends jemalloc: ``>=5.1.0`` :depends libgcc-ng: ``>=12`` :depends libjemalloc: ``>=5.3.0`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends tbb: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rapmap and update with:: mamba update rapmap To create a new environment, run:: mamba create --name myenvname rapmap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rapmap: (see `rapmap/tags`_ for valid values for ````) .. |downloads_rapmap| image:: https://img.shields.io/conda/dn/bioconda/rapmap.svg?style=flat :target: https://anaconda.org/bioconda/rapmap :alt: (downloads) .. |docker_rapmap| image:: https://quay.io/repository/biocontainers/rapmap/status :target: https://quay.io/repository/biocontainers/rapmap .. _`rapmap/tags`: https://quay.io/repository/biocontainers/rapmap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rapmap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rapmap/README.html