:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rcorrector' .. highlight: bash rcorrector ========== .. conda:recipe:: rcorrector :replaces_section_title: :noindex: Rcorrector \(RNA\-seq error CORRECTOR\) is a kmer\-based error correction method for RNA\-seq data. Rcorrector can also be applied to other type of sequencing data where the read coverage is non\-uniform\, such as single\-cell sequencing. :homepage: https://github.com/mourisl/Rcorrector/ :license: GPL3 / GPL-3.0-only :recipe: /`rcorrector `_/`meta.yaml `_ :links: doi: :doi:`10.1186/s13742-015-0089-y`, biotools: :biotools:`rcorrector` .. conda:package:: rcorrector |downloads_rcorrector| |docker_rcorrector| :versions: .. raw:: html
1.0.7-01.0.6-01.0.5-11.0.5-01.0.4-31.0.4-21.0.4-11.0.4-01.0.3.1-1 ``1.0.7-0``,  ``1.0.6-0``,  ``1.0.5-1``,  ``1.0.5-0``,  ``1.0.4-3``,  ``1.0.4-2``,  ``1.0.4-1``,  ``1.0.4-0``,  ``1.0.3.1-1``,  ``1.0.3.1-0``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0``,  ``1.0.2-2``,  ``1.0.2-1``,  ``1.0.2-0`` .. raw:: html
:depends kmer-jellyfish: ``2.*`` :depends kmer-jellyfish: ``>=2.3.1,<2.3.2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends perl: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rcorrector and update with:: mamba update rcorrector To create a new environment, run:: mamba create --name myenvname rcorrector with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rcorrector: (see `rcorrector/tags`_ for valid values for ````) .. |downloads_rcorrector| image:: https://img.shields.io/conda/dn/bioconda/rcorrector.svg?style=flat :target: https://anaconda.org/bioconda/rcorrector :alt: (downloads) .. |docker_rcorrector| image:: https://quay.io/repository/biocontainers/rcorrector/status :target: https://quay.io/repository/biocontainers/rcorrector .. _`rcorrector/tags`: https://quay.io/repository/biocontainers/rcorrector?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rcorrector/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rcorrector/README.html