:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rdp_classifier' .. highlight: bash rdp_classifier ============== .. conda:recipe:: rdp_classifier :replaces_section_title: :noindex: Naive Bayesian classifier that can rapidly and accurately provide taxonomic assignments from domain to genus :homepage: https://sourceforge.net/projects/rdp-classifier/ :license: GPL-2.0-only :recipe: /`rdp_classifier `_/`meta.yaml `_ .. conda:package:: rdp_classifier |downloads_rdp_classifier| |docker_rdp_classifier| :versions: ``2.14-0``,  ``2.13-1``,  ``2.13-0``,  ``2.2-2``,  ``2.2-1``,  ``2.2-0`` :depends openjdk: ``>=11`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rdp_classifier and update with:: mamba update rdp_classifier To create a new environment, run:: mamba create --name myenvname rdp_classifier with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rdp_classifier: (see `rdp_classifier/tags`_ for valid values for ````) .. |downloads_rdp_classifier| image:: https://img.shields.io/conda/dn/bioconda/rdp_classifier.svg?style=flat :target: https://anaconda.org/bioconda/rdp_classifier :alt: (downloads) .. |docker_rdp_classifier| image:: https://quay.io/repository/biocontainers/rdp_classifier/status :target: https://quay.io/repository/biocontainers/rdp_classifier .. _`rdp_classifier/tags`: https://quay.io/repository/biocontainers/rdp_classifier?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rdp_classifier/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rdp_classifier/README.html