:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'riboplot' .. highlight: bash riboplot ======== .. conda:recipe:: riboplot :replaces_section_title: :noindex: Plot read counts of RiboSeq data from BAM format alignment files :homepage: https://github.com/vimalkvn/riboplot :license: LGPL / GNU General Public License (GPL) :recipe: /`riboplot `_/`meta.yaml `_ .. conda:package:: riboplot |downloads_riboplot| |docker_riboplot| :versions: ``0.3.1-2``,  ``0.3.1-1``,  ``0.3.1-0`` :depends bedtools: ``<=2.24.0`` :depends matplotlib: ``<=1.4.3`` :depends mock: ``1.0.1`` :depends pysam: ``<=0.8.3`` :depends python: ``>=2.7,<2.8.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install riboplot and update with:: mamba update riboplot To create a new environment, run:: mamba create --name myenvname riboplot with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/riboplot: (see `riboplot/tags`_ for valid values for ````) .. |downloads_riboplot| image:: https://img.shields.io/conda/dn/bioconda/riboplot.svg?style=flat :target: https://anaconda.org/bioconda/riboplot :alt: (downloads) .. |docker_riboplot| image:: https://quay.io/repository/biocontainers/riboplot/status :target: https://quay.io/repository/biocontainers/riboplot .. _`riboplot/tags`: https://quay.io/repository/biocontainers/riboplot?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/riboplot/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/riboplot/README.html