:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'rpf-count-cds' .. highlight: bash rpf-count-cds ============= .. conda:recipe:: rpf-count-cds :replaces_section_title: :noindex: A python script for counting RPF reads map to CDS region. :homepage: https://github.com/xzt41/RPF-count-CDS :license: MIT :recipe: /`rpf-count-cds `_/`meta.yaml `_ .. conda:package:: rpf-count-cds |downloads_rpf-count-cds| |docker_rpf-count-cds| :versions: ``0.0.1-1``,  ``0.0.1-0`` :depends htseq: :depends python: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install rpf-count-cds and update with:: mamba update rpf-count-cds To create a new environment, run:: mamba create --name myenvname rpf-count-cds with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/rpf-count-cds: (see `rpf-count-cds/tags`_ for valid values for ````) .. |downloads_rpf-count-cds| image:: https://img.shields.io/conda/dn/bioconda/rpf-count-cds.svg?style=flat :target: https://anaconda.org/bioconda/rpf-count-cds :alt: (downloads) .. |docker_rpf-count-cds| image:: https://quay.io/repository/biocontainers/rpf-count-cds/status :target: https://quay.io/repository/biocontainers/rpf-count-cds .. _`rpf-count-cds/tags`: https://quay.io/repository/biocontainers/rpf-count-cds?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rpf-count-cds/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/rpf-count-cds/README.html