:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'scater-scripts' .. highlight: bash scater-scripts ============== .. conda:recipe:: scater-scripts :replaces_section_title: :noindex: A set of wrappers for individual components of the Scater package. Functions R packages are hard to call when building workflows outside of R\, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects\, but the ultimate objective is to have language\-agnostic intermediate formats allowing composite workflows using a variety of software packages. :homepage: https://github.com/ebi-gene-expression-group/bioconductor-scater-scripts :license: GPL / GPL-3 :recipe: /`scater-scripts `_/`meta.yaml `_ .. conda:package:: scater-scripts |downloads_scater-scripts| |docker_scater-scripts| :versions: ``0.0.5-1``,  ``0.0.5-0`` :depends bioconductor-biobase: :depends bioconductor-scater: ``>=1.10.0,<1.11.0`` :depends bioconductor-singlecellexperiment-scripts: :depends r-optparse: :depends r-rtsne: :depends r-workflowscriptscommon: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install scater-scripts and update with:: conda update scater-scripts or use the docker container:: docker pull quay.io/biocontainers/scater-scripts: (see `scater-scripts/tags`_ for valid values for ````) .. |downloads_scater-scripts| image:: https://img.shields.io/conda/dn/bioconda/scater-scripts.svg?style=flat :target: https://anaconda.org/bioconda/scater-scripts :alt: (downloads) .. |docker_scater-scripts| image:: https://quay.io/repository/biocontainers/scater-scripts/status :target: https://quay.io/repository/biocontainers/scater-scripts .. _`scater-scripts/tags`: https://quay.io/repository/biocontainers/scater-scripts?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scater-scripts/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/scater-scripts/README.html