:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'scoring-matrices' .. highlight: bash scoring-matrices ================ .. conda:recipe:: scoring-matrices :replaces_section_title: :noindex: Dependency free\, Cython\-compatible scoring matrices to use with biological sequences. :homepage: https://github.com/althonos/scoring-matrices :documentation: https://scoring-matrices.readthedocs.org :license: MIT / MIT :recipe: /`scoring-matrices `_/`meta.yaml `_ .. conda:package:: scoring-matrices |downloads_scoring-matrices| |docker_scoring-matrices| :versions: ``0.3.0-0``,  ``0.2.2-1``,  ``0.2.2-0``,  ``0.2.1-1``,  ``0.2.1-0``,  ``0.2.0-1``,  ``0.2.0-0`` :depends libgcc: ``>=12`` :depends python: ``>=3.13,<3.14.0a0`` :depends python_abi: ``3.13.* *_cp313`` :requirements: :additional platforms: .. raw:: html linux-aarch64osx-arm64 .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install scoring-matrices and update with:: mamba update scoring-matrices To create a new environment, run:: mamba create --name myenvname scoring-matrices with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/scoring-matrices: (see `scoring-matrices/tags`_ for valid values for ````) .. |downloads_scoring-matrices| image:: https://img.shields.io/conda/dn/bioconda/scoring-matrices.svg?style=flat :target: https://anaconda.org/bioconda/scoring-matrices :alt: (downloads) .. |docker_scoring-matrices| image:: https://quay.io/repository/biocontainers/scoring-matrices/status :target: https://quay.io/repository/biocontainers/scoring-matrices .. _`scoring-matrices/tags`: https://quay.io/repository/biocontainers/scoring-matrices?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scoring-matrices/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/scoring-matrices/README.html