:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'scrublet' .. highlight: bash scrublet ======== .. conda:recipe:: scrublet :replaces_section_title: :noindex: Doublet prediction in single\-cell RNA\-sequencing data :homepage: https://github.com/allonkleinlab/scrublet :license: MIT / MIT License :recipe: /`scrublet `_/`meta.yaml `_ .. conda:package:: scrublet |downloads_scrublet| |docker_scrublet| :versions: ``0.2.3-1``,  ``0.2.3-0``,  ``0.2.1-4``,  ``0.2.1-3``,  ``0.2.1-2``,  ``0.2.1-1``,  ``0.2.1-0`` :depends matplotlib-base: :depends numba: :depends numpy: :depends pandas: :depends python: :depends python-annoy: :depends scikit-image: :depends scikit-learn: :depends scipy: :depends umap-learn: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install scrublet and update with:: mamba update scrublet To create a new environment, run:: mamba create --name myenvname scrublet with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/scrublet: (see `scrublet/tags`_ for valid values for ````) .. |downloads_scrublet| image:: https://img.shields.io/conda/dn/bioconda/scrublet.svg?style=flat :target: https://anaconda.org/bioconda/scrublet :alt: (downloads) .. |docker_scrublet| image:: https://quay.io/repository/biocontainers/scrublet/status :target: https://quay.io/repository/biocontainers/scrublet .. _`scrublet/tags`: https://quay.io/repository/biocontainers/scrublet?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/scrublet/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/scrublet/README.html