:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'sequenza-utils' .. highlight: bash sequenza-utils ============== .. conda:recipe:: sequenza-utils :replaces_section_title: :noindex: Analysis of cancer sequencing samples\, utilities for the R package sequenza :homepage: http://sequenza-utils.readthedocs.org :license: GPL3 / GNU General Public v3 (GPLv3) :recipe: /`sequenza-utils `_/`meta.yaml `_ .. conda:package:: sequenza-utils |downloads_sequenza-utils| |docker_sequenza-utils| :versions: ``3.0.0-5``,  ``3.0.0-4``,  ``3.0.0-3``,  ``3.0.0-2``,  ``3.0.0-1``,  ``3.0.0-0``,  ``2.1.9999b0-0`` :depends htslib: :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends python: ``>=2.7,<2.8.0a0`` :depends python_abi: ``2.7.* *_cp27mu`` :depends samtools: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install sequenza-utils and update with:: conda update sequenza-utils or use the docker container:: docker pull quay.io/biocontainers/sequenza-utils: (see `sequenza-utils/tags`_ for valid values for ````) .. |downloads_sequenza-utils| image:: https://img.shields.io/conda/dn/bioconda/sequenza-utils.svg?style=flat :target: https://anaconda.org/bioconda/sequenza-utils :alt: (downloads) .. |docker_sequenza-utils| image:: https://quay.io/repository/biocontainers/sequenza-utils/status :target: https://quay.io/repository/biocontainers/sequenza-utils .. _`sequenza-utils/tags`: https://quay.io/repository/biocontainers/sequenza-utils?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/sequenza-utils/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/sequenza-utils/README.html