:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'shannon' .. highlight: bash shannon ======= .. conda:recipe:: shannon :replaces_section_title: :noindex: A program for assembling transcripts from RNA\-Seq data. :homepage: http://sreeramkannan.github.io/Shannon/ :developer docs: https://github.com/sreeramkannan/Shannon :license: GPL3 / GPLv3 :recipe: /`shannon `_/`meta.yaml `_ .. conda:package:: shannon |downloads_shannon| |docker_shannon| :versions: ``0.0.2-1``,  ``0.0.2-0`` :depends cvxopt: :depends kmer-jellyfish: :depends metis: :depends numpy: :depends parallel: :depends python: ``<3`` :depends quorum: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install shannon and update with:: mamba update shannon To create a new environment, run:: mamba create --name myenvname shannon with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/shannon: (see `shannon/tags`_ for valid values for ````) .. |downloads_shannon| image:: https://img.shields.io/conda/dn/bioconda/shannon.svg?style=flat :target: https://anaconda.org/bioconda/shannon :alt: (downloads) .. |docker_shannon| image:: https://quay.io/repository/biocontainers/shannon/status :target: https://quay.io/repository/biocontainers/shannon .. _`shannon/tags`: https://quay.io/repository/biocontainers/shannon?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shannon/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/shannon/README.html