:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'shorah' .. highlight: bash shorah ====== .. conda:recipe:: shorah/1.99.2 :replaces_section_title: :noindex: The Short Reads Assembly into Haplotypes \(ShoRAH\) program for inferring viral haplotypes from NGS data :homepage: https://github.com/cbg-ethz/shorah :license: GPL3 / GPLv3 :recipe: /`shorah `_/`1.99.2 `_/`meta.yaml `_ :links: biotools: :biotools:`shorah` .. conda:package:: shorah |downloads_shorah| |docker_shorah| :versions: .. raw:: html
1.99.2-41.99.2-31.99.2-21.99.2-11.99.2-01.99.1-11.99.1-01.99.0-41.99.0-3 ``1.99.2-4``,  ``1.99.2-3``,  ``1.99.2-2``,  ``1.99.2-1``,  ``1.99.2-0``,  ``1.99.1-1``,  ``1.99.1-0``,  ``1.99.0-4``,  ``1.99.0-3``,  ``1.99.0-2``,  ``1.99.0-1``,  ``1.99.0-0``,  ``1.1.3-10``,  ``1.1.3-9``,  ``1.1.3-8``,  ``1.1.3-7``,  ``1.1.3-6``,  ``1.1.3-5``,  ``1.1.3-4``,  ``1.1.3-2``,  ``1.1.3-1``,  ``1.1.3-0``,  ``1.1.2-0``,  ``1.1.1-0``,  ``1.1.0-2``,  ``1.1.0-1``,  ``1.1.0-0``,  ``1.0.0-2``,  ``1.0.0-1``,  ``1.0.0-0`` .. raw:: html
:depends biopython: :depends htslib: ``>=1.14,<1.15.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends libzlib: ``>=1.2.11,<1.3.0a0`` :depends numpy: :depends python: ``>=3.6,<3.7.0a0`` :depends python_abi: ``3.6.* *_cp36m`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install shorah and update with:: conda update shorah or use the docker container:: docker pull quay.io/biocontainers/shorah: (see `shorah/tags`_ for valid values for ````) .. |downloads_shorah| image:: https://img.shields.io/conda/dn/bioconda/shorah.svg?style=flat :target: https://anaconda.org/bioconda/shorah :alt: (downloads) .. |docker_shorah| image:: https://quay.io/repository/biocontainers/shorah/status :target: https://quay.io/repository/biocontainers/shorah .. _`shorah/tags`: https://quay.io/repository/biocontainers/shorah?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/shorah/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/shorah/README.html