:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'smafa' .. highlight: bash smafa ===== .. conda:recipe:: smafa :replaces_section_title: :noindex: smafa is a tool for querying and clustering pre\-aligned small pre\-aligned sequences. :homepage: https://github.com/wwood/smafa :license: GPL3 :recipe: /`smafa `_/`meta.yaml `_ .. conda:package:: smafa |downloads_smafa| |docker_smafa| :versions: ``0.7.1-0``,  ``0.7.0-2``,  ``0.7.0-1``,  ``0.7.0-0``,  ``0.6.1-0``,  ``0.5.0-2``,  ``0.5.0-1``,  ``0.5.0-0`` :depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install smafa and update with:: mamba update smafa To create a new environment, run:: mamba create --name myenvname smafa with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/smafa: (see `smafa/tags`_ for valid values for ````) .. |downloads_smafa| image:: https://img.shields.io/conda/dn/bioconda/smafa.svg?style=flat :target: https://anaconda.org/bioconda/smafa :alt: (downloads) .. |docker_smafa| image:: https://quay.io/repository/biocontainers/smafa/status :target: https://quay.io/repository/biocontainers/smafa .. _`smafa/tags`: https://quay.io/repository/biocontainers/smafa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/smafa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/smafa/README.html