:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'snp-sites' .. highlight: bash snp-sites ========= .. conda:recipe:: snp-sites :replaces_section_title: :noindex: Finds SNP sites from a multi\-FASTA alignment file. :homepage: https://github.com/sanger-pathogens/snp-sites :license: GPL / GPL-3.0 :recipe: /`snp-sites `_/`meta.yaml `_ .. conda:package:: snp-sites |downloads_snp-sites| |docker_snp-sites| :versions: .. raw:: html
2.5.1-42.5.1-32.5.1-22.5.1-12.5.1-02.4.1-12.4.1-02.4.0-32.4.0-0 ``2.5.1-4``,  ``2.5.1-3``,  ``2.5.1-2``,  ``2.5.1-1``,  ``2.5.1-0``,  ``2.4.1-1``,  ``2.4.1-0``,  ``2.4.0-3``,  ``2.4.0-0``,  ``2.3.3-1``,  ``2.3.3-0``,  ``2.3.2-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install snp-sites and update with:: mamba update snp-sites To create a new environment, run:: mamba create --name myenvname snp-sites with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/snp-sites: (see `snp-sites/tags`_ for valid values for ````) .. |downloads_snp-sites| image:: https://img.shields.io/conda/dn/bioconda/snp-sites.svg?style=flat :target: https://anaconda.org/bioconda/snp-sites :alt: (downloads) .. |docker_snp-sites| image:: https://quay.io/repository/biocontainers/snp-sites/status :target: https://quay.io/repository/biocontainers/snp-sites .. _`snp-sites/tags`: https://quay.io/repository/biocontainers/snp-sites?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/snp-sites/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/snp-sites/README.html