:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'soapdenovo-trans' .. highlight: bash soapdenovo-trans ================ .. conda:recipe:: soapdenovo-trans :replaces_section_title: :noindex: SOAPdenovo\-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework\, adapt to alternative splicing and different expression level among transcripts. :homepage: http://soap.genomics.org.cn/SOAPdenovo-Trans.html :license: GPLv3 :recipe: /`soapdenovo-trans `_/`meta.yaml `_ .. conda:package:: soapdenovo-trans |downloads_soapdenovo-trans| |docker_soapdenovo-trans| :versions: .. raw:: html
1.04-61.04-51.04-41.04-31.04-21.04-11.04-01.03-21.03-1 ``1.04-6``,  ``1.04-5``,  ``1.04-4``,  ``1.04-3``,  ``1.04-2``,  ``1.04-1``,  ``1.04-0``,  ``1.03-2``,  ``1.03-1``,  ``1.03-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install soapdenovo-trans and update with:: mamba update soapdenovo-trans To create a new environment, run:: mamba create --name myenvname soapdenovo-trans with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/soapdenovo-trans: (see `soapdenovo-trans/tags`_ for valid values for ````) .. |downloads_soapdenovo-trans| image:: https://img.shields.io/conda/dn/bioconda/soapdenovo-trans.svg?style=flat :target: https://anaconda.org/bioconda/soapdenovo-trans :alt: (downloads) .. |docker_soapdenovo-trans| image:: https://quay.io/repository/biocontainers/soapdenovo-trans/status :target: https://quay.io/repository/biocontainers/soapdenovo-trans .. _`soapdenovo-trans/tags`: https://quay.io/repository/biocontainers/soapdenovo-trans?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/soapdenovo-trans/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/soapdenovo-trans/README.html