:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'spoa' .. highlight: bash spoa ==== .. conda:recipe:: spoa :replaces_section_title: :noindex: SIMD partial order alignment tool\/library :homepage: https://github.com/rvaser/spoa :license: MIT :recipe: /`spoa `_/`meta.yaml `_ :links: biotools: :biotools:`spoa`, doi: :doi:`10.1101/gr.214270.116` .. conda:package:: spoa |downloads_spoa| |docker_spoa| :versions: .. raw:: html
4.1.4-04.1.3-04.1.2-04.1.1-04.1.0-04.0.8-04.0.7-54.0.7-44.0.7-3 ``4.1.4-0``,  ``4.1.3-0``,  ``4.1.2-0``,  ``4.1.1-0``,  ``4.1.0-0``,  ``4.0.8-0``,  ``4.0.7-5``,  ``4.0.7-4``,  ``4.0.7-3``,  ``4.0.7-2``,  ``4.0.7-1``,  ``4.0.7-0``,  ``4.0.6-0``,  ``4.0.5-0``,  ``4.0.3-0``,  ``4.0.0-0``,  ``3.4.0-0``,  ``3.0.2-0``,  ``3.0.1-0``,  ``3.0.0-0`` .. raw:: html
:depends _openmp_mutex: ``>=4.5`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install spoa and update with:: mamba update spoa To create a new environment, run:: mamba create --name myenvname spoa with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/spoa: (see `spoa/tags`_ for valid values for ````) .. |downloads_spoa| image:: https://img.shields.io/conda/dn/bioconda/spoa.svg?style=flat :target: https://anaconda.org/bioconda/spoa :alt: (downloads) .. |docker_spoa| image:: https://quay.io/repository/biocontainers/spoa/status :target: https://quay.io/repository/biocontainers/spoa .. _`spoa/tags`: https://quay.io/repository/biocontainers/spoa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/spoa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/spoa/README.html