:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'star-fusion' .. highlight: bash star-fusion =========== .. conda:recipe:: star-fusion :replaces_section_title: :noindex: STAR\-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included. :homepage: https://github.com/STAR-Fusion/STAR-Fusion :license: BSD / BSD-3-Clause :recipe: /`star-fusion `_/`meta.yaml `_ .. conda:package:: star-fusion |downloads_star-fusion| |docker_star-fusion| :versions: .. raw:: html
1.10.0-11.10.0-01.9.1-11.9.1-01.9.0-11.9.0-01.8.1-21.8.1-11.8.1-0 ``1.10.0-1``,  ``1.10.0-0``,  ``1.9.1-1``,  ``1.9.1-0``,  ``1.9.0-1``,  ``1.9.0-0``,  ``1.8.1-2``,  ``1.8.1-1``,  ``1.8.1-0``,  ``1.7.0-1``,  ``1.7.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.5.0-0``,  ``1.4.0-2``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.3.2-2``,  ``1.3.2-1``,  ``1.3.2-0``,  ``1.2.0-0``,  ``1.1.0-0``,  ``1.0.0-0``,  ``0.7.0-1``,  ``0.7.0-0``,  ``0.5.4-2``,  ``0.5.4-1``,  ``0.5.4-0``,  ``0.5.3-0``,  ``0.4.0-0`` .. raw:: html
:depends bbmap: :depends blast: :depends bzip2: :depends gmap: :depends htslib: :depends igv-reports: :depends openssl: ``<1.1`` :depends perl: :depends perl-carp: :depends perl-carp-assert: :depends perl-db-file: :depends perl-io-gzip: :depends perl-json-xs: :depends perl-set-intervaltree: :depends perl-uri: :depends python: :depends samtools: ``<1.10`` :depends star: ``2.7.8a`` :depends trinity: ``<2.9`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install star-fusion and update with:: conda update star-fusion or use the docker container:: docker pull quay.io/biocontainers/star-fusion: (see `star-fusion/tags`_ for valid values for ````) .. |downloads_star-fusion| image:: https://img.shields.io/conda/dn/bioconda/star-fusion.svg?style=flat :target: https://anaconda.org/bioconda/star-fusion :alt: (downloads) .. |docker_star-fusion| image:: https://quay.io/repository/biocontainers/star-fusion/status :target: https://quay.io/repository/biocontainers/star-fusion .. _`star-fusion/tags`: https://quay.io/repository/biocontainers/star-fusion?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/star-fusion/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/star-fusion/README.html