:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'strling' .. highlight: bash strling ======= .. conda:recipe:: strling :replaces_section_title: :noindex: STRling \(pronounced like “sterling”\) is a method to detect large STR expansions from short\-read sequencing data. :homepage: https://github.com/quinlan-lab/STRling :license: MIT :recipe: /`strling `_/`meta.yaml `_ .. conda:package:: strling |downloads_strling| |docker_strling| :versions: .. raw:: html
0.5.2-10.5.2-00.5.1-40.5.1-30.5.1-20.5.1-10.5.1-00.5.0-00.4.2-1 ``0.5.2-1``,  ``0.5.2-0``,  ``0.5.1-4``,  ``0.5.1-3``,  ``0.5.1-2``,  ``0.5.1-1``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.2-1``,  ``0.4.2-0``,  ``0.4.1-1``,  ``0.4.1-0``,  ``0.4.0-0``,  ``0.3.0-0``,  ``0.2.1-0``,  ``0.1.0-0`` .. raw:: html
:depends biopython: :depends bpipe: :depends htslib: ``>=1.17,<1.20.0a0`` :depends libgcc-ng: ``>=12`` :depends pandas: :depends pysam: :depends pytest: :depends pytest-runner: :depends python: ``>=3.7`` :depends scikit-learn: :depends seaborn: :depends statsmodels: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install strling and update with:: mamba update strling To create a new environment, run:: mamba create --name myenvname strling with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/strling: (see `strling/tags`_ for valid values for ````) .. |downloads_strling| image:: https://img.shields.io/conda/dn/bioconda/strling.svg?style=flat :target: https://anaconda.org/bioconda/strling :alt: (downloads) .. |docker_strling| image:: https://quay.io/repository/biocontainers/strling/status :target: https://quay.io/repository/biocontainers/strling .. _`strling/tags`: https://quay.io/repository/biocontainers/strling?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/strling/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/strling/README.html