:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'strucvis' .. highlight: bash strucvis ======== .. conda:recipe:: strucvis :replaces_section_title: :noindex: strucVis \: Display small RNA depth of coverage on a predicted RNA secondary structure :homepage: https://github.com/MikeAxtell/strucVis :license: GPL / GPL-3.0 :recipe: /`strucvis `_/`meta.yaml `_ .. conda:package:: strucvis |downloads_strucvis| |docker_strucvis| :versions: ``0.7-0``,  ``0.6-0`` :depends perl: :depends samtools: ``>=1.10`` :depends viennarna: ``2.*`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install strucvis and update with:: mamba update strucvis To create a new environment, run:: mamba create --name myenvname strucvis with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/strucvis: (see `strucvis/tags`_ for valid values for ````) .. |downloads_strucvis| image:: https://img.shields.io/conda/dn/bioconda/strucvis.svg?style=flat :target: https://anaconda.org/bioconda/strucvis :alt: (downloads) .. |docker_strucvis| image:: https://quay.io/repository/biocontainers/strucvis/status :target: https://quay.io/repository/biocontainers/strucvis .. _`strucvis/tags`: https://quay.io/repository/biocontainers/strucvis?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/strucvis/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/strucvis/README.html