:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'taxtastic' .. highlight: bash taxtastic ========= .. conda:recipe:: taxtastic :replaces_section_title: :noindex: Tools for taxonomic naming and annotation :homepage: https://github.com/fhcrc/taxtastic :license: GPL / GPL-3.0 :recipe: /`taxtastic `_/`meta.yaml `_ .. conda:package:: taxtastic |downloads_taxtastic| |docker_taxtastic| :versions: .. raw:: html
0.10.0-10.10.0-00.9.3-00.9.2-00.9.1-00.8.11-00.8.9-00.8.5-20.8.5-0 ``0.10.0-1``,  ``0.10.0-0``,  ``0.9.3-0``,  ``0.9.2-0``,  ``0.9.1-0``,  ``0.8.11-0``,  ``0.8.9-0``,  ``0.8.5-2``,  ``0.8.5-0``,  ``0.5.4-0`` .. raw:: html
:depends decorator: :depends dendropy: :depends fastalite: :depends jinja2: :depends psycopg2-binary: :depends python: ``>=3`` :depends pyyaml: :depends sqlalchemy: ``>=2`` :depends sqlparse: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install taxtastic and update with:: mamba update taxtastic To create a new environment, run:: mamba create --name myenvname taxtastic with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/taxtastic: (see `taxtastic/tags`_ for valid values for ````) .. |downloads_taxtastic| image:: https://img.shields.io/conda/dn/bioconda/taxtastic.svg?style=flat :target: https://anaconda.org/bioconda/taxtastic :alt: (downloads) .. |docker_taxtastic| image:: https://quay.io/repository/biocontainers/taxtastic/status :target: https://quay.io/repository/biocontainers/taxtastic .. _`taxtastic/tags`: https://quay.io/repository/biocontainers/taxtastic?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/taxtastic/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/taxtastic/README.html