:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'tesorter' .. highlight: bash tesorter ======== .. conda:recipe:: tesorter :replaces_section_title: :noindex: Lineage\-level classification of transposable elements using conserved protein domains. :homepage: https://github.com/zhangrengang/TEsorter :license: GPL / GPLv3 :recipe: /`tesorter `_/`meta.yaml `_ .. conda:package:: tesorter |downloads_tesorter| |docker_tesorter| :versions: ``1.4.6-0``,  ``1.3.0-0``,  ``1.2.5.2-0`` :depends biopython: :depends blast: :depends drmaa: :depends hmmer: :depends pp: :depends python: ``>=3`` :depends xopen: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install tesorter and update with:: mamba update tesorter To create a new environment, run:: mamba create --name myenvname tesorter with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/tesorter: (see `tesorter/tags`_ for valid values for ````) .. |downloads_tesorter| image:: https://img.shields.io/conda/dn/bioconda/tesorter.svg?style=flat :target: https://anaconda.org/bioconda/tesorter :alt: (downloads) .. |docker_tesorter| image:: https://quay.io/repository/biocontainers/tesorter/status :target: https://quay.io/repository/biocontainers/tesorter .. _`tesorter/tags`: https://quay.io/repository/biocontainers/tesorter?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tesorter/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/tesorter/README.html