:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'tmalign' .. highlight: bash tmalign ======= .. conda:recipe:: tmalign :replaces_section_title: :noindex: TM\-align sequence\-order independent protein structure alignment :homepage: https://zhanglab.ccmb.med.umich.edu/TM-align/ :license: BSD-like :recipe: /`tmalign `_/`meta.yaml `_ :links: doi: :doi:`10.1093/nar/gki524`, doi: :doi:`10.1002/prot.20264` .. conda:package:: tmalign |downloads_tmalign| |docker_tmalign| :versions: ``20170708-6``,  ``20170708-5``,  ``20170708-4``,  ``20170708-3``,  ``20170708-2``,  ``20170708-1``,  ``20170708-0`` :depends libgcc-ng: ``>=12`` :depends libgfortran-ng: :depends libgfortran5: ``>=12.2.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install tmalign and update with:: mamba update tmalign To create a new environment, run:: mamba create --name myenvname tmalign with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/tmalign: (see `tmalign/tags`_ for valid values for ````) .. |downloads_tmalign| image:: https://img.shields.io/conda/dn/bioconda/tmalign.svg?style=flat :target: https://anaconda.org/bioconda/tmalign :alt: (downloads) .. |docker_tmalign| image:: https://quay.io/repository/biocontainers/tmalign/status :target: https://quay.io/repository/biocontainers/tmalign .. _`tmalign/tags`: https://quay.io/repository/biocontainers/tmalign?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/tmalign/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/tmalign/README.html