:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'trf' .. highlight: bash trf === .. conda:recipe:: trf :replaces_section_title: :noindex: Tandem Repeats Finder is a program to locate and display tandem repeats in DNA sequences. :homepage: https://tandem.bu.edu/trf/trf.html :license: AGPL-3.0 :recipe: /`trf `_/`meta.yaml `_ :links: biotools: :biotools:`Trf` .. conda:package:: trf |downloads_trf| |docker_trf| :versions: ``4.09.1-4``,  ``4.09.1-3``,  ``4.09.1-2``,  ``4.09.1-1``,  ``4.09.1-0``,  ``4.09-2``,  ``4.09-1``,  ``4.09-0``,  ``4.07b-0`` :depends libgcc-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install trf and update with:: mamba update trf To create a new environment, run:: mamba create --name myenvname trf with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/trf: (see `trf/tags`_ for valid values for ````) .. |downloads_trf| image:: https://img.shields.io/conda/dn/bioconda/trf.svg?style=flat :target: https://anaconda.org/bioconda/trf :alt: (downloads) .. |docker_trf| image:: https://quay.io/repository/biocontainers/trf/status :target: https://quay.io/repository/biocontainers/trf .. _`trf/tags`: https://quay.io/repository/biocontainers/trf?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trf/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/trf/README.html