:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'trtools' .. highlight: bash trtools ======= .. conda:recipe:: trtools :replaces_section_title: :noindex: Toolkit for genome\-wide analysis of tandem repeats :homepage: https://github.com/gymreklab/TRTools :documentation: https://trtools.readthedocs.io/ :license: MIT / MIT :recipe: /`trtools `_/`meta.yaml `_ :links: biotools: :biotools:`trtools`, doi: :doi:`10.1093/bioinformatics/btaa736` .. conda:package:: trtools |downloads_trtools| |docker_trtools| :versions: .. raw:: html
6.0.1-06.0.0-05.1.1-05.1.0-05.0.2-05.0.1-04.2.1-04.1.0-04.0.2-0 ``6.0.1-0``,  ``6.0.0-0``,  ``5.1.1-0``,  ``5.1.0-0``,  ``5.0.2-0``,  ``5.0.1-0``,  ``4.2.1-0``,  ``4.1.0-0``,  ``4.0.2-0``,  ``4.0.1-0``,  ``4.0.0-2``,  ``4.0.0-1``,  ``4.0.0-0``,  ``3.0.3-0``,  ``3.0.2-0``,  ``2.0.18-1``,  ``2.0.18-0`` .. raw:: html
:depends art: ``>=2016.06.05`` :depends cyvcf2: ``>=0.30.4`` :depends matplotlib-base: ``>=3.1.2`` :depends numpy: ``>=1.17.3,<2.0`` :depends pandas: ``>=1.2.0`` :depends pyfaidx: ``>=0.5.6`` :depends pysam: ``>=0.15.4`` :depends python: ``>=3.7.1,<4.0`` :depends scikit-learn: ``>=0.23.1`` :depends scipy: ``>=1.3.3`` :depends statsmodels: ``>=0.10.2`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install trtools and update with:: mamba update trtools To create a new environment, run:: mamba create --name myenvname trtools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/trtools: (see `trtools/tags`_ for valid values for ````) .. |downloads_trtools| image:: https://img.shields.io/conda/dn/bioconda/trtools.svg?style=flat :target: https://anaconda.org/bioconda/trtools :alt: (downloads) .. |docker_trtools| image:: https://quay.io/repository/biocontainers/trtools/status :target: https://quay.io/repository/biocontainers/trtools .. _`trtools/tags`: https://quay.io/repository/biocontainers/trtools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/trtools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/trtools/README.html