:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'twopaco' .. highlight: bash twopaco ======= .. conda:recipe:: twopaco :replaces_section_title: :noindex: A fast constructor of the compressed de Bruijn graph from many genomes. :homepage: https://github.com/medvedevgroup/TwoPaCo :license: Custom OSS :recipe: /`twopaco `_/`meta.yaml `_ .. conda:package:: twopaco |downloads_twopaco| |docker_twopaco| :versions: .. raw:: html
1.0.0-21.0.0-11.0.0-00.9.4-30.9.4-20.9.4-10.9.4-00.9.2-30.9.2-2 ``1.0.0-2``,  ``1.0.0-1``,  ``1.0.0-0``,  ``0.9.4-3``,  ``0.9.4-2``,  ``0.9.4-1``,  ``0.9.4-0``,  ``0.9.2-3``,  ``0.9.2-2``,  ``0.9.2-0`` .. raw:: html
:depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends tbb: ``>=2021.9.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install twopaco and update with:: mamba update twopaco To create a new environment, run:: mamba create --name myenvname twopaco with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/twopaco: (see `twopaco/tags`_ for valid values for ````) .. |downloads_twopaco| image:: https://img.shields.io/conda/dn/bioconda/twopaco.svg?style=flat :target: https://anaconda.org/bioconda/twopaco :alt: (downloads) .. |docker_twopaco| image:: https://quay.io/repository/biocontainers/twopaco/status :target: https://quay.io/repository/biocontainers/twopaco .. _`twopaco/tags`: https://quay.io/repository/biocontainers/twopaco?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/twopaco/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/twopaco/README.html