:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'ucsc-axtsort' .. highlight: bash ucsc-axtsort ============ .. conda:recipe:: ucsc-axtsort :replaces_section_title: :noindex: Sort axt files :homepage: http://hgdownload.cse.ucsc.edu/admin/exe/ :license: varies; see http://genome.ucsc.edu/license :recipe: /`ucsc-axtsort `_/`meta.yaml `_ .. conda:package:: ucsc-axtsort |downloads_ucsc-axtsort| |docker_ucsc-axtsort| :versions: ``377-2``,  ``377-1``,  ``377-0``,  ``366-0``,  ``357-2``,  ``357-1``,  ``357-0``,  ``332-0`` :depends libgcc-ng: ``>=9.3.0`` :depends libpng: ``>=1.6.37,<1.7.0a0`` :depends libuuid: ``>=2.32.1,<3.0a0`` :depends mysql-connector-c: ``>=6.1.11,<6.1.12.0a0`` :depends openssl: ``>=1.1.1j,<1.1.2a`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install ucsc-axtsort and update with:: mamba update ucsc-axtsort To create a new environment, run:: mamba create --name myenvname ucsc-axtsort with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/ucsc-axtsort: (see `ucsc-axtsort/tags`_ for valid values for ````) .. |downloads_ucsc-axtsort| image:: https://img.shields.io/conda/dn/bioconda/ucsc-axtsort.svg?style=flat :target: https://anaconda.org/bioconda/ucsc-axtsort :alt: (downloads) .. |docker_ucsc-axtsort| image:: https://quay.io/repository/biocontainers/ucsc-axtsort/status :target: https://quay.io/repository/biocontainers/ucsc-axtsort .. _`ucsc-axtsort/tags`: https://quay.io/repository/biocontainers/ucsc-axtsort?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ucsc-axtsort/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/ucsc-axtsort/README.html