:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'ucsc-pslmappostchain'
.. highlight: bash

ucsc-pslmappostchain
====================

.. conda:recipe:: ucsc-pslmappostchain
   :replaces_section_title:
   :noindex:

    Post genomic pslMap \(TransMap\) chaining.  This takes transcripts that have been mapped via genomic chains adds back in blocks that didn\'t get include in genomic chains due to complex rearrangements or other issues. 

   :homepage: http://hgdownload.cse.ucsc.edu/admin/exe/
   :license: varies; see http://genome.ucsc.edu/license
   :recipe: /`ucsc-pslmappostchain <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ucsc-pslmappostchain>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/ucsc-pslmappostchain/meta.yaml>`_

   


.. conda:package:: ucsc-pslmappostchain

   |downloads_ucsc-pslmappostchain| |docker_ucsc-pslmappostchain|

   :versions:
      
      

      ``377-3``,  ``377-2``,  ``377-1``,  ``377-0``,  ``366-0``,  ``357-2``,  ``357-1``,  ``357-0``

      

   
   :depends libgcc-ng: ``>=9.4.0``
   :depends libpng: ``>=1.6.37,<1.7.0a0``
   :depends libuuid: ``>=2.32.1,<3.0a0``
   :depends libzlib: ``>=1.2.11,<1.3.0a0``
   :depends mysql-connector-c: ``>=6.1.11,<6.1.12.0a0``
   :depends openssl: ``>=1.1.1l,<1.1.2a``
   :depends zlib: ``>=1.2.11,<1.3.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install ucsc-pslmappostchain

   and update with::

      mamba update ucsc-pslmappostchain

  To create a new environment, run::

      mamba create --name myenvname ucsc-pslmappostchain

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/ucsc-pslmappostchain:<tag>

   (see `ucsc-pslmappostchain/tags`_ for valid values for ``<tag>``)


.. |downloads_ucsc-pslmappostchain| image:: https://img.shields.io/conda/dn/bioconda/ucsc-pslmappostchain.svg?style=flat
   :target: https://anaconda.org/bioconda/ucsc-pslmappostchain
   :alt:   (downloads)
.. |docker_ucsc-pslmappostchain| image:: https://quay.io/repository/biocontainers/ucsc-pslmappostchain/status
   :target: https://quay.io/repository/biocontainers/ucsc-pslmappostchain
.. _`ucsc-pslmappostchain/tags`: https://quay.io/repository/biocontainers/ucsc-pslmappostchain?tab=tags


.. raw:: html

    <script>
        var package = "ucsc-pslmappostchain";
        var versions = ["377","377","377","377","366"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/ucsc-pslmappostchain/README.html