:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'umi_tools' .. highlight: bash umi_tools ========= .. conda:recipe:: umi_tools :replaces_section_title: :noindex: Tools for dealing with Unique Molecular Identifiers \(UMIs\) \/ Random Molecular Tags \(RMTs\) :homepage: https://github.com/CGATOxford/UMI-tools :license: MIT / MIT License :recipe: /`umi_tools `_/`meta.yaml `_ .. conda:package:: umi_tools |downloads_umi_tools| |docker_umi_tools| :versions: .. raw:: html
1.1.5-11.1.5-01.1.4-21.1.4-11.1.4-01.1.3-01.1.2-11.1.2-01.1.1-2 ``1.1.5-1``,  ``1.1.5-0``,  ``1.1.4-2``,  ``1.1.4-1``,  ``1.1.4-0``,  ``1.1.3-0``,  ``1.1.2-1``,  ``1.1.2-0``,  ``1.1.1-2``,  ``1.1.1-1``,  ``1.1.0-0``,  ``1.0.1-2``,  ``1.0.1-1``,  ``1.0.1-0``,  ``1.0.0-1``,  ``1.0.0-0``,  ``0.5.5-1``,  ``0.5.5-0``,  ``0.5.4-3``,  ``0.5.4-2``,  ``0.5.4-1``,  ``0.5.4-0``,  ``0.5.3-1``,  ``0.5.3-0``,  ``0.5.2-0``,  ``0.5.1-0``,  ``0.5.0-0``,  ``0.4.4-0``,  ``0.4.3-0``,  ``0.2.3-2``,  ``0.2.3-1``,  ``0.2.3-0`` .. raw:: html
:depends future: :depends libgcc-ng: ``>=12`` :depends matplotlib-base: :depends numpy: ``>=1.7`` :depends pandas: ``>=0.12.0`` :depends pybktree: :depends pysam: ``>=0.16.0.1`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends regex: :depends scipy: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install umi_tools and update with:: mamba update umi_tools To create a new environment, run:: mamba create --name myenvname umi_tools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/umi_tools: (see `umi_tools/tags`_ for valid values for ````) .. |downloads_umi_tools| image:: https://img.shields.io/conda/dn/bioconda/umi_tools.svg?style=flat :target: https://anaconda.org/bioconda/umi_tools :alt: (downloads) .. |docker_umi_tools| image:: https://quay.io/repository/biocontainers/umi_tools/status :target: https://quay.io/repository/biocontainers/umi_tools .. _`umi_tools/tags`: https://quay.io/repository/biocontainers/umi_tools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/umi_tools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/umi_tools/README.html