:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'usher' .. highlight: bash usher ===== .. conda:recipe:: usher :replaces_section_title: :noindex: Ultrafast Sample Placement on Existing Trees \(UShER\) :homepage: https://github.com/yatisht/usher :license: MIT / MIT :recipe: /`usher `_/`meta.yaml `_ .. conda:package:: usher |downloads_usher| |docker_usher| :versions: .. raw:: html
0.5.4-00.5.3-00.5.2-20.5.2-10.5.2-00.5.1-00.5.0-10.5.0-00.4.8-4 ``0.5.4-0``,  ``0.5.3-0``,  ``0.5.2-2``,  ``0.5.2-1``,  ``0.5.2-0``,  ``0.5.1-0``,  ``0.5.0-1``,  ``0.5.0-0``,  ``0.4.8-4``,  ``0.4.8-0``,  ``0.4.7-0``,  ``0.4.6-0``,  ``0.4.4-0``,  ``0.4.3-0``,  ``0.4.2-0``,  ``0.4.1-0``,  ``0.4.0-1``,  ``0.4.0-0``,  ``0.3.5-0``,  ``0.3.4-0``,  ``0.3.2-0``,  ``0.3.1-1``,  ``0.3.1-0``,  ``0.2.1-0``,  ``0.2.0-1``,  ``0.2.0-0``,  ``0.1.3-0`` .. raw:: html
:depends boost-cpp: ``>=1.74.0,<1.74.1.0a0`` :depends isa-l: :depends libgcc-ng: ``>=10.3.0`` :depends libprotobuf: ``>=3.18.1,<3.19.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends mafft: :depends openmpi: ``>=4.1.3,<5.0a0`` :depends openssh: :depends ucsc-fatovcf: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install usher and update with:: conda update usher or use the docker container:: docker pull quay.io/biocontainers/usher: (see `usher/tags`_ for valid values for ````) .. |downloads_usher| image:: https://img.shields.io/conda/dn/bioconda/usher.svg?style=flat :target: https://anaconda.org/bioconda/usher :alt: (downloads) .. |docker_usher| image:: https://quay.io/repository/biocontainers/usher/status :target: https://quay.io/repository/biocontainers/usher .. _`usher/tags`: https://quay.io/repository/biocontainers/usher?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/usher/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/usher/README.html