:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'variantbam' .. highlight: bash variantbam ========== .. conda:recipe:: variantbam :replaces_section_title: :noindex: Filtering and profiling of next\-generational sequencing data using region\-specific rules :homepage: https://github.com/jwalabroad/VariantBam :license: GPLv3 :recipe: /`variantbam `_/`meta.yaml `_ .. conda:package:: variantbam |downloads_variantbam| |docker_variantbam| :versions: .. raw:: html
1.4.4a-81.4.4a-71.4.4a-61.4.4a-51.4.4a-41.4.4a-31.4.4a-21.4.4a-11.4.4a-0 ``1.4.4a-8``,  ``1.4.4a-7``,  ``1.4.4a-6``,  ``1.4.4a-5``,  ``1.4.4a-4``,  ``1.4.4a-3``,  ``1.4.4a-2``,  ``1.4.4a-1``,  ``1.4.4a-0``,  ``1.4.3-0``,  ``1.3.0-0``,  ``1.2.1_2015.01.08-0`` .. raw:: html
:depends bzip2: ``>=1.0.8,<2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends xz: ``>=5.2.6,<6.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install variantbam and update with:: mamba update variantbam To create a new environment, run:: mamba create --name myenvname variantbam with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/variantbam: (see `variantbam/tags`_ for valid values for ````) .. |downloads_variantbam| image:: https://img.shields.io/conda/dn/bioconda/variantbam.svg?style=flat :target: https://anaconda.org/bioconda/variantbam :alt: (downloads) .. |docker_variantbam| image:: https://quay.io/repository/biocontainers/variantbam/status :target: https://quay.io/repository/biocontainers/variantbam .. _`variantbam/tags`: https://quay.io/repository/biocontainers/variantbam?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/variantbam/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/variantbam/README.html