:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'vase' .. highlight: bash vase ==== .. conda:recipe:: vase/0.2.4 :replaces_section_title: :noindex: Variant Annotation\, Segregation and Exclusion for family or cohort based rare\-disease sequencing studies :homepage: https://github.com/david-a-parry/vase :license: MIT / MIT :recipe: /`vase `_/`0.2.4 `_/`meta.yaml `_ .. conda:package:: vase |downloads_vase| |docker_vase| :versions: ``0.5.1-0``,  ``0.2.4-0`` :depends biopython: :depends mygene: :depends natsort: :depends numpy: :depends pysam: ``>=0.17`` :depends python: :depends requests: :depends xlsxwriter: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install vase and update with:: mamba update vase To create a new environment, run:: mamba create --name myenvname vase with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/vase: (see `vase/tags`_ for valid values for ````) .. |downloads_vase| image:: https://img.shields.io/conda/dn/bioconda/vase.svg?style=flat :target: https://anaconda.org/bioconda/vase :alt: (downloads) .. |docker_vase| image:: https://quay.io/repository/biocontainers/vase/status :target: https://quay.io/repository/biocontainers/vase .. _`vase/tags`: https://quay.io/repository/biocontainers/vase?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vase/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/vase/README.html