:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'vphaser2' .. highlight: bash vphaser2 ======== .. conda:recipe:: vphaser2 :replaces_section_title: :noindex: V\-Phaser 2 is a tool to call variants in genetically heterogeneous populations from ultra\-deep sequence data :homepage: https://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/v-phaser-2 :license: single user license for academic non-commercial research purposes only :recipe: /`vphaser2 `_/`meta.yaml `_ .. conda:package:: vphaser2 |downloads_vphaser2| |docker_vphaser2| :versions: .. raw:: html
2.0-132.0-122.0-112.0-102.0-92.0-82.0-72.0-62.0-5 ``2.0-13``,  ``2.0-12``,  ``2.0-11``,  ``2.0-10``,  ``2.0-9``,  ``2.0-8``,  ``2.0-7``,  ``2.0-6``,  ``2.0-5``,  ``2.0-4``,  ``2.0-3``,  ``2.0-1``,  ``2.0-0`` .. raw:: html
:depends bamtools: ``>=2.5.1,<2.5.2.0a0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install vphaser2 and update with:: mamba update vphaser2 To create a new environment, run:: mamba create --name myenvname vphaser2 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/vphaser2: (see `vphaser2/tags`_ for valid values for ````) .. |downloads_vphaser2| image:: https://img.shields.io/conda/dn/bioconda/vphaser2.svg?style=flat :target: https://anaconda.org/bioconda/vphaser2 :alt: (downloads) .. |docker_vphaser2| image:: https://quay.io/repository/biocontainers/vphaser2/status :target: https://quay.io/repository/biocontainers/vphaser2 .. _`vphaser2/tags`: https://quay.io/repository/biocontainers/vphaser2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/vphaser2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/vphaser2/README.html