:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'yahmm' .. highlight: bash yahmm ===== .. conda:recipe:: yahmm :replaces_section_title: :noindex: YAHMM is a HMM package for Python\, implemented in Cython for speed. :homepage: http://pypi.python.org/pypi/yahmm/ :license: MIT :recipe: /`yahmm `_/`meta.yaml `_ .. conda:package:: yahmm |downloads_yahmm| |docker_yahmm| :versions: ``1.1.3-9``,  ``1.1.3-8``,  ``1.1.3-7``,  ``1.1.3-6``,  ``1.1.3-5``,  ``1.1.3-4``,  ``1.1.3-3``,  ``1.1.3-1``,  ``1.1.3-0`` :depends cython: ``>=0.20.1`` :depends libgcc-ng: ``>=12`` :depends matplotlib-base: ``>=1.3.1`` :depends networkx: ``>=1.8.1`` :depends numpy: ``>=1.24.3,<2.0a0`` :depends numpy: ``>=1.8.0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends scipy: ``>=0.13.3`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install yahmm and update with:: mamba update yahmm To create a new environment, run:: mamba create --name myenvname yahmm with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/yahmm: (see `yahmm/tags`_ for valid values for ````) .. |downloads_yahmm| image:: https://img.shields.io/conda/dn/bioconda/yahmm.svg?style=flat :target: https://anaconda.org/bioconda/yahmm :alt: (downloads) .. |docker_yahmm| image:: https://quay.io/repository/biocontainers/yahmm/status :target: https://quay.io/repository/biocontainers/yahmm .. _`yahmm/tags`: https://quay.io/repository/biocontainers/yahmm?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/yahmm/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/yahmm/README.html