Available packagesΒΆ

Package Version License Linux OSX
bioconductor-chippeakanno 3.10.2
bioconductor-chippeakanno 3.12.0
tesseract 3.04.01
perl-heap-simple-xs 0.10
perl-moosex-types 0.46
perl-path-tiny 0.076
perl-path-tiny 0.082
minced 0.2.0
perl-file-find 1.27
bioconductor-rrho 1.16.0
bioconductor-rrho 1.18.0
perl-dbi 1.634
perl-dbi 1.636
ucsc-bigwigcorrelate 324
ucsc-bigwigcorrelate 332
ucsc-bigwigcorrelate 357
bioconductor-genomicscores 1.0.2
bioconductor-genomicscores 1.2.0
bioconductor-txdb.celegans.ucsc.ce6.ensgene 3.2.2
bioconductor-targetscore 1.14.0
bioconductor-targetscore 1.16.0
bowtie 1.0.0
bowtie 1.1.2
bowtie 1.2.0
bowtie 1.2.1.1
bioconductor-aims 1.10.0
bioconductor-aims 1.8.0
fastqc 0.10.1
fastqc 0.11.2
fastqc 0.11.3
fastqc 0.11.4
fastqc 0.11.5
bioconductor-treeio 1.0.2
bioconductor-treeio 1.2.0
bioconductor-treeio 1.2.1
ucsc-localtime 357
perl-xml-sax-writer 0.56
perl-xml-namespacesupport 1.11
metaseq-all 0.5.6
ucsc-gff3topsl 324
ucsc-gff3topsl 357
xxmotif 1.6
rscape 0.2.1
rscape 0.3.1
rscape 0.6.1
bioconductor-rsvsim 1.16.0
bioconductor-rsvsim 1.18.0
mintmap 1.0
bioconductor-vsn 3.38.0
bioconductor-vsn 3.44.0
bioconductor-vsn 3.46.0
extract_genome_region 0.0.3
r-matrixeqtl 2.1.1
hmmer 2.3.2
hmmer 3.1b2
coprarna 2.1.0
coprarna 2.1.1
coprarna 2.1.2
qiimetomaaslin 1.1.0
rseg 0.4.9
ucsc-twobitmask 324
ucsc-twobitmask 332
ucsc-twobitmask 357
perl-html-tree 5.03
bioconductor-imagehts 1.26.0
bioconductor-sights 1.2.0
bioconductor-sights 1.4.0
crisper_recognition_tool 1.2
dominate 2.1.16
xtandem 15.12.15.2
bioconductor-stategra 1.10.0
bioconductor-stategra 1.12.0
perl-moosex-app-role-log4perl 0.03
sourmash 1.0
sourmash 2.0.0a1
sourmash 2.0.0a2
sparse-neighbors-search 0.2.3
sparse-neighbors-search 0.3
r-readmzxmldata 2.8.1
perl-file-slurper 0.008
bioconductor-hmmcopy 1.18.0
bioconductor-hmmcopy 1.20.0
graphmap 0.22.1
graphmap 0.3.1p1
graphmap 0.4.0
graphmap 0.5.2
maker 2.31.9
simplejson 3.8.1
pacbio_falcon 052016
mosdepth 0.1.1
mosdepth 0.1.3
mosdepth 0.1.4a
mosdepth 0.1.5
mosdepth 0.1.6
mosdepth 0.1.7
mosdepth 0.1.9
mosdepth 0.2.0
gdk-pixbuf 2.32.2
jq 1.5
bioconductor-metacca 1.4.0
bioconductor-metacca 1.6.0
embassy-phylip 3.69.650
gecode 4.4.0
gecode 5.0.0
gecode 5.1.0
perl-scalar-util-numeric 0.40
ftputil 3.2
perl-cpan-meta-validator 2.140640
bioconductor-mlp 1.24.0
bioconductor-mlp 1.26.0
fastq-screen 0.11.1
fastq-screen 0.11.3
fastq-screen 0.5.2
bioconductor-hgu133plus2.db 3.2.3
perl-io-prompt 0.997004
cmfinder 0.2
cmfinder 0.4.1.9
pbbam 0.1
perl-task-weaken 1.04
bioconductor-made4 1.44.0
bioconductor-made4 1.50.0
bioconductor-made4 1.52.0
discovardenovo 52488
nanosim v1.0.1
nanosim v1.2.0
r-gpseq 0.5
bioconductor-cancermutationanalysis 1.18.0
bioconductor-cancermutationanalysis 1.20.0
ucsc-mafaddqrows 324
ucsc-mafaddqrows 357
perl-gdtextutil 0.86
fqtools 2.0
ibdseq r1206
r-sartools 1.2.0
r-sartools 1.3.2
r-sartools 1.4.1
r-sartools 1.5.1
atropos 1.0.23
atropos 1.1.10
atropos 1.1.2
atropos 1.1.4
atropos 1.1.5
bioconductor-fastseg 1.20.0
bioconductor-fastseg 1.22.0
bioconductor-fastseg 1.24.0
openbabel 2.3.2
openbabel 2.3.90dev7d621d9
openbabel 2.4.1
ig-checkflowtypes 1.0.0
skewer 0.1.126
skewer 0.2.2
meneco 1.5.2
kraken-ea 0.10.5ea.3
r-spp 1.11
r-spp 1.13
r-spp 1.14
r-spp 1.14post
bioconductor-frmatools 1.28.0
bioconductor-viper 1.10.0
bioconductor-viper 1.12.0
phylotoast 1.3.0
phylotoast 1.4.0rc2
perl-array-compare 2.11
bioconductor-genomicalignments 1.10.0
bioconductor-genomicalignments 1.12.2
bioconductor-genomicalignments 1.14.0
bioconductor-genomicalignments 1.6.0
bioconductor-genomicalignments 1.6.1
bioconductor-genomicalignments 1.6.3
bioconductor-genomicalignments 1.8.4
perl-mldbm 2.05
plink 1.90b4
bioconductor-affy 1.48.0
bioconductor-affy 1.50.0
bioconductor-affy 1.54.0
bioconductor-affy 1.56.0
bioconductor-outlierd 1.40.0
bioconductor-outlierd 1.42.0
monovar v0.0.1
pypore 0.0.5.dev20160304220337
pypore 0.0.6.dev20161116235131
perl-math-random 0.72
seqmagick 0.6.1
oncofuse 1.1.0
oncofuse 1.1.1
ucsc-hgfindspec 357
pypeflow 0.1.0
perl-importer 0.024
perl-test2-suite 0.000061
msgf_plus 1.0.0
msgf_plus 2016.10.26
msgf_plus 2017.07.21
cityhash 0.1.5
cityhash 0.1.7
qsignature 0.1pre
prinseq 0.20.4
bioconductor-flowcl 1.10.0
bioconductor-flowcl 1.12.0
bioconductor-flowcl 1.14.0
bioconductor-flowcl 1.16.0
minimap2 2.0.r191
minimap2 2.1.1
minimap2 2.1.r311
minimap2 2.3
minimap2 2.4
minimap2 2.5
r-cimpl 1.1
gemini 0.17.3dev0
gemini 0.17.3dev1
gemini 0.18.0
gemini 0.18.1
gemini 0.18.2
gemini 0.18.3
gemini 0.18a
gemini 0.19.0
gemini 0.19.1
gemini 0.19.2a
gemini 0.20.0
gemini 0.20.0a0
gemini 0.20.1
ruffus 2.6.3
joblib 0.9.3
bctools 0.2.1
gimmemotifs 0.10.0
gimmemotifs 0.10.0b1
gimmemotifs 0.10.0b4
gimmemotifs 0.10.0b5
gimmemotifs 0.10.0b6
gimmemotifs 0.11.1
gimmemotifs 0.8.9.1
gimmemotifs 0.9.0.3
gimmemotifs 0.9.0.4
gimmemotifs 0.9.0.5
gimmemotifs 0.9.0.6
r-dpeak 2.0.1
bioconductor-mzid 1.14.0
bioconductor-mzid 1.16.0
cluster-picker 1.2.3
ucsc-bedweedoverlapping 324
ucsc-bedweedoverlapping 332
ucsc-bedweedoverlapping 357
gsort 0.0.1
gsort 0.0.2
gsort 0.0.6
bioconductor-anota 1.24.0
bioconductor-anota 1.26.0
vcfkit 0.0.4
vcfkit 0.1.6
ucsc-hgloadchain 324
ucsc-hgloadchain 357
jbrowse 1.12.1
jbrowse 1.12.3
bioconductor-mirnatap 1.10.0
bioconductor-mirnatap 1.12.0
ucsc-pslsort 324
ucsc-pslsort 332
ucsc-pslsort 357
spine 0.2.2
bioconductor-singlecellexperiment 1.0.0
bioconductor-summarizedexperiment 1.0.0
bioconductor-summarizedexperiment 1.0.1
bioconductor-summarizedexperiment 1.0.2
bioconductor-summarizedexperiment 1.2.3
bioconductor-summarizedexperiment 1.4.0
bioconductor-summarizedexperiment 1.6.5
bioconductor-summarizedexperiment 1.8.0
bpp-phyl 2.2.0
extract_fullseq 3.101
bmtagger 3.101
fastq-and-furious 0.1.0
fastq-and-furious 0.2.0
r-readbrukerflexdata 1.8.2
r-readbrukerflexdata 1.8.5
bioconductor-stringdb 1.16.0
bioconductor-stringdb 1.18.0
wgs-assembler 8.3
perl-io-stringy 2.111
seqkit 0.3.4.1
seqkit 0.4.3
seqkit 0.4.4
seqkit 0.4.5
seqkit 0.5.0
seqkit 0.5.1
seqkit 0.5.2
seqkit 0.5.3
seqkit 0.5.4
seqkit 0.5.5
seqkit 0.6.0
seqkit 0.7.0
seqkit 0.7.1
htslib 1.2.1
htslib 1.3
htslib 1.3.1
htslib 1.3.2
htslib 1.4
htslib 1.4.1
htslib 1.5
htslib 1.6
peptide-shaker 1.1.3
peptide-shaker 1.11.0
peptide-shaker 1.13.3
peptide-shaker 1.13.6
peptide-shaker 1.14.4
peptide-shaker 1.14.6
peptide-shaker 1.15.0
peptide-shaker 1.15.1
peptide-shaker 1.16.0
peptide-shaker 1.16.13
peptide-shaker 1.16.14
peptide-shaker 1.16.3
peptide-shaker 1.16.4
wham 1.7.0.162
wham 1.7.0.307
wham 1.7.0.311
bioconductor-gagedata 2.10.0
bioconductor-gagedata 2.14.0
bioconductor-gagedata 2.16.0
bioconductor-gagedata 2.8.0
irfinder 1.2.2
irfinder 1.2.3
ucsc-blat 357
perl-module-build-tiny 0.039
ucsc-ameme 332
ucsc-ameme 357
bioconductor-org.hs.eg.db 3.2.3
bioconductor-org.hs.eg.db 3.3.0
bioconductor-org.hs.eg.db 3.4.1
bioconductor-org.hs.eg.db 3.4.2
bioconductor-org.hs.eg.db 3.5.0
bioconductor-biodist 1.48.0
bioconductor-biodist 1.50.0
ucsc-netclass 332
ucsc-netclass 357
bioconductor-cytolib 1.0.1
gatk4 4.0a1.2.7.2
gatk4 4.0b1
gatk4 4.0b2
gatk4 4.0b3
gatk4 4.0b4
gatk4 4.0b5
gatk4 4.0b6
transabyss 1.5.4
transabyss 1.5.5
ipython-cluster-helper 0.5.0
ipython-cluster-helper 0.5.1
ipython-cluster-helper 0.5.2
ipython-cluster-helper 0.5.3
ipython-cluster-helper 0.5.4
ipython-cluster-helper 0.5.5
ipython-cluster-helper 0.5.6
ipython-cluster-helper 0.5.7
ipython-cluster-helper 0.5.8
ipython-cluster-helper 0.5.9
perl-data-walk 2.01
sift4g 2.0.0
ucsc-bigwigtobedgraph 324
ucsc-bigwigtobedgraph 332
ucsc-bigwigtobedgraph 357
muse 1.0.rc
pyasp 1.4.3
perl-scope-guard 0.21
bioconductor-bitseq 1.20.0
bioconductor-bitseq 1.22.0
bioconductor-heatplus 2.20.0
bioconductor-heatplus 2.22.0
bioconductor-heatplus 2.24.0
bioconductor-scater 1.4.0
bioconductor-scater 1.6.0
rainbow 2.0.4
graph_embed 1.0
perl-timedate 2.30
dammit 0.3
metametamerge 1.0
metametamerge 1.1
geodl 1.0b1
geodl 1.0b5.1
wgsim 1.0
ray 2.3.1
bioconductor-multiscan 1.36.0
bioconductor-multiscan 1.38.0
bioconductor-pepxmltab 1.10.0
bioconductor-pepxmltab 1.12.0
sts-smctc 1.0
fasta3 36.3.8
bcbio-prioritize 0.0.2
bcbio-prioritize 0.0.4
bcbio-prioritize 0.0.5
bcbio-prioritize 0.0.6
bcbio-prioritize 0.0.7
bcbio-prioritize 0.0.8
rdock 2013.1
ucsc-hgfakeagp 357
bioconductor-plw 1.36.0
bioconductor-plw 1.38.0
bioconductor-fgsea 1.2.1
bioconductor-fgsea 1.4.0
ucsc-bigbedinfo 324
ucsc-bigbedinfo 332
ucsc-bigbedinfo 357
bioconductor-matter 1.2.0
bioconductor-matter 1.4.1
star 2.4.2a
star 2.5.0a
star 2.5.0b
star 2.5.0c
star 2.5.1b
star 2.5.2a
star 2.5.2b
star 2.5.3a
fastaindex 0.11c
bwa 0.5.9
bwa 0.6.2
bwa 0.7.12
bwa 0.7.13
bwa 0.7.15
bwa 0.7.16
bwa 0.7.17
bwa 0.7.3a
bwa 0.7.8
perl-class-data-inheritable 0.08
bioconductor-ebimage 4.12.2
bioconductor-ebimage 4.13.0
bioconductor-ebimage 4.18.3
bioconductor-ebimage 4.20.0
bioconductor-nudge 1.42.0
bioconductor-nudge 1.44.0
perl-test-unit-lite 0.1202
represent 1.5.1
taco v0.7.0
beagle-lib 2.1.2
perl-regexp-common 2016060801
bioconductor-rbiopaxparser 2.16.0
bioconductor-rbiopaxparser 2.18.0
singularity 2.3
singularity 2.4
indelfixer 1.1
bioconductor-ipo 1.0.0
bioconductor-ipo 1.2.2
bioconductor-ipo 1.4.0
pytest-marks 0.4
lorma 0.4
blast 2.2.21
blast 2.2.31
blast 2.5.0
blast 2.6.0
blast 2.7.1
bioconductor-affycomp 1.52.0
bioconductor-affycomp 1.54.0
sickle 0.5
blasr_libcpp 1.1
delly 0.7.2
delly 0.7.6
delly 0.7.7
pygenometracks 0.1
pygenometracks 1.0
bioconductor-rbcbook1 1.44.0
bioconductor-rbcbook1 1.46.0
stringtie 0.97
stringtie 1.0.1
stringtie 1.0.3
stringtie 1.0.4
stringtie 1.1.0
stringtie 1.1.1
stringtie 1.1.2
stringtie 1.2.0
stringtie 1.2.2
stringtie 1.2.3
stringtie 1.2.4
stringtie 1.3.0
stringtie 1.3.3
perl-b-hooks-endofscope 0.21
bioconductor-repitools 1.20.0
bioconductor-repitools 1.22.0
bioconductor-repitools 1.24.0
bioconductor-homo.sapiens 1.3.1
prodigal 2.6.2
prodigal 2.6.3
ucsc-pslrecalcmatch 324
ucsc-pslrecalcmatch 332
ucsc-pslrecalcmatch 357
primer3-py 0.5.1
primer3-py 0.5.4
perl-text-tabs-wrap 2013.0523
r-gam 1.14
r-gam 1.14_4
bioconductor-annmap 1.18.0
bioconductor-annmap 1.20.0
openslide 3.4.1
bioconductor-multtest 2.26.0
bioconductor-multtest 2.28.0
bioconductor-multtest 2.32.0
bioconductor-multtest 2.34.0
ucsc-chainantirepeat 324
ucsc-chainantirepeat 332
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bioconductor-teqc 3.16.0
bioconductor-teqc 3.18.0
ucsc-rowstocols 324
ucsc-rowstocols 332
ucsc-rowstocols 357
nanomath 0.12.5
nanomath 0.14.2
bioconductor-msnbase 2.2.0
bioconductor-msnbase 2.4.0
bioconductor-a4core 1.24.0
bioconductor-a4core 1.26.0
phizz 0.0.1
bioconductor-rots 1.0.0
bioconductor-rots 1.4.0
bioconductor-rots 1.6.0
perl-log-any 1.045
bioconductor-rrdp 1.10.0
bioconductor-rrdp 1.12.0
bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene 3.2.2
ucsc-hubcheck 357
r-aroma.core 3.0.0
r-aroma.core 3.1.1
bioconductor-biomformat 1.0.2
bioconductor-biomformat 1.2.0
bioconductor-biomformat 1.4.0
bioconductor-biomformat 1.6.0
edlib 1.0.0
edlib 1.1.2
edlib 1.2.0
bioconductor-cner 1.10.2
bioconductor-cner 1.12.1
bioconductor-cner 1.14.0
logbook 0.12.2
logbook 1.0.0
isatools 0.9.3
ucsc-pslhisto 324
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afterqc 0.9.6
osra 2.0.1
osra 2.1.0
bamhash 1.0
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ucsc-fanoise 332
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connor 0.5.1
perl-proc-fork 0.804
perl-path-class 0.36
bioconductor-metaarray 1.54.0
bioconductor-metaarray 1.56.0
baitfisher 1.0
obitools 1.0.010
obitools 1.2.10
obitools 1.2.11
perl-math-cdf 0.1
bioconductor-bsgenome.mmusculus.ucsc.mm9 1.4.0
bioconductor-annotationfilter 1.0.0
bioconductor-annotationfilter 1.2.0
perl-estscan2 2.1
pythonpy 0.4.2
pymzml 0.7.5
pymzml 0.7.7
pymzml 0.7.8
r-haplo.stats 1.7.7
bioconductor-txdb.drerio.ucsc.danrer10.refgene 3.4.0
bioconductor-txdb.drerio.ucsc.danrer10.refgene 3.4.2
ucsc-ratotab 324
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plastid 0.4.7
nanofilt 1.1.3
nanofilt 1.1.4
nanofilt 1.2.0
nanofilt 1.7.0
nanofilt 1.8.0
bioconductor-biovizbase 1.18.0
bioconductor-biovizbase 1.20.0
bioconductor-biovizbase 1.24.0
bioconductor-biovizbase 1.26.0
geneimpacts 0.0.4
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wtforms-components 0.10.0
bioconductor-ternarynet 1.20.0
bioconductor-ternarynet 1.22.0
perl-tie-cache 0.21
perl-bloom-faster 1.7
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perl-parse-recdescent 1.967013
phyloflash 2.0beta6
igdiscover 0.3
igdiscover 0.4
igdiscover 0.5
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bioconductor-plgem 1.48.0
bioconductor-plgem 1.50.0
bioconductor-ringo 1.38.0
bioconductor-ringo 1.40.0
bioconductor-ringo 1.42.0
seqan_tcoffee 1.13.3
bioconductor-annotationdbi 1.30.1
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bioconductor-annotationdbi 1.32.2
bioconductor-annotationdbi 1.32.3
bioconductor-annotationdbi 1.34.4
bioconductor-annotationdbi 1.36.0
bioconductor-annotationdbi 1.36.2
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bioconductor-annotationdbi 1.40.0
ucsc-splitfilebycolumn 324
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ucsc-splitfilebycolumn 357
ucsc-bigwigmerge 324
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ucsc-bigwigmerge 357
bio_hansel 0.1.0
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breseq 0.29.0
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gdal 1.9.2
r-gsmoothr 0.1.7
samtools 0.1.12
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schavott 0.2
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perl-error 0.17024
soapec 2.03
snakemake 3.10.0
snakemake 3.10.1
snakemake 3.10.2
snakemake 3.11.0
snakemake 3.11.1
snakemake 3.11.2
snakemake 3.12.0
snakemake 3.13.0
snakemake 3.13.2
snakemake 3.13.3
snakemake 3.4.2
snakemake 3.5.1
snakemake 3.5.2
snakemake 3.5.3
snakemake 3.5.4
snakemake 3.5.5
snakemake 3.6.0
snakemake 3.6.1
snakemake 3.7.0
snakemake 3.7.1
snakemake 3.8.0
snakemake 3.8.1
snakemake 3.8.2
snakemake 3.9.0
snakemake 3.9.1
snakemake 4.0.0
snakemake 4.1.0
snakemake 4.2.0
snakemake 4.3.0
snakemake 4.3.1
ucsc-chainprenet 324
ucsc-chainprenet 332
ucsc-chainprenet 357
perl-sub-install 0.928
intervalstats 1.01
ucsc-pslpostarget 324
ucsc-pslpostarget 332
ucsc-pslpostarget 357
ucsc-pslcheck 324
ucsc-pslcheck 332
ucsc-pslcheck 357
bioconductor-mmnet 1.13.0
asciigenome 0.2.0
asciigenome 0.6.4
asciigenome 1.0.0
asciigenome 1.1.0
asciigenome 1.2.0
asciigenome 1.8.0
bioconductor-tfbstools 1.12.2
bioconductor-tfbstools 1.14.2
bioconductor-tfbstools 1.15.7
bioconductor-tfbstools 1.16.0
maaslin 0.04
parallel 20150922
parallel 20160622
parallel 20170422
bedtools 2.16.2
bedtools 2.17.0
bedtools 2.19.1
bedtools 2.20.1
bedtools 2.22
bedtools 2.23.0
bedtools 2.24.0
bedtools 2.25.0
bedtools 2.26.0
bedtools 2.26.0gx
bioconductor-mulcom 1.26.0
bioconductor-mulcom 1.28.0
perl-text-tabs 2013.0523
bioconductor-psicquic 1.14.0
bioconductor-psicquic 1.16.1
bioconductor-arrayexpress 1.36.1
bioconductor-arrayexpress 1.38.0
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bioconductor-promise 1.30.0
bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene 3.2.2
bioconductor-regioner 1.10.0
bioconductor-regioner 1.2.0
bioconductor-regioner 1.6.2
bioconductor-regioner 1.8.1
odose 1.0
perl-heap-simple-perl 0.14
emirge 0.61.1
taxonkit 0.1.7
tax