Available packagesΒΆ

Package Version License Linux OSX
primer3 1.1.4
primer3 2.3.7
bioconductor-heatmaps 1.0.0
bioconductor-heatmaps 1.2.0
bioconductor-regioner 1.10.0
bioconductor-regioner 1.2.0
bioconductor-regioner 1.6.2
bioconductor-regioner 1.8.1
ucsc-pslmap 324
ucsc-pslmap 332
ucsc-pslmap 357
ucsc-bedcoverage 324
ucsc-bedcoverage 332
ucsc-bedcoverage 357
gb_taxonomy_tools 1.0.0
bioconductor-s4vectors 0.10.3
bioconductor-s4vectors 0.12.0
bioconductor-s4vectors 0.12.2
bioconductor-s4vectors 0.14.7
bioconductor-s4vectors 0.16.0
bioconductor-s4vectors 0.6.6
bioconductor-s4vectors 0.8.0
bioconductor-s4vectors 0.8.1
bioconductor-s4vectors 0.8.11
bioconductor-s4vectors 0.8.5
bioconductor-s4vectors 0.8.7
bioconductor-s4vectors 0.9.0
dupre 0.1
sistr_cmd 0.3.1
sistr_cmd 0.3.3
sistr_cmd 0.3.4
sistr_cmd 0.3.6
sistr_cmd 1.0.2
melt 1.0.3
lsc 2.0
bioconductor-egsea 1.6.0
perl-lib 0.63
bcbio-nextgen-vm 0.1.0a
bioconductor-amountain 1.2.0
bioconductor-amountain 1.4.0
perl-bio-asn1-entrezgene 1.70
perl-bio-asn1-entrezgene 1.72
ariba 0.6.0
ariba 2.10.0
ariba 2.10.1
ariba 2.5.1
openslide 3.4.1
bioconductor-chimera 1.20.0
crimson 0.3.0
biolite 1.1.0
bioconductor-genbankr 1.6.0
bioconductor-rbsurv 2.34.0
bioconductor-rbsurv 2.36.0
nanonet 2.0.0
preseq 2.0.2
exparna 1.0.1
visitor 0.1.2
lohhla 20171108
emperor 0.9.51
ucsc-rowstocols 324
ucsc-rowstocols 332
ucsc-rowstocols 357
ucsc-fatotab 332
ucsc-fatotab 357
perl-dbd-sqlite 1.50
bioconductor-rpx 1.12.1
bioconductor-rpx 1.14.0
bioconductor-affydata 1.24.0
bioconductor-affydata 1.26.0
igvtools 2.3.16
igvtools 2.3.48
igvtools 2.3.75
igvtools 2.3.93
perl-socket6 0.25
perl-array-utils 0.5
plastid 0.4.7
bioconductor-mvcclass 1.50.0
bioconductor-mvcclass 1.52.0
pgma-simple 0.1
bioconductor-metaarray 1.54.0
bioconductor-metaarray 1.56.0
rdflib-jsonld 0.3
rdflib-jsonld 0.4
perl-set-intspan 1.19
hts-nim-tools 0.1.5
transrate-tools 1.0.0
cancerit-allelecount 2.1.2
cyordereddict 0.2.2
picopore 0.2.1
picopore 0.2.2
picopore 1.0.0
picopore 1.1.2
picopore 1.1.4
picopore 1.1.5
picopore 1.2.0
bioconductor-aroma.light 3.4.0
bioconductor-aroma.light 3.6.0
bioconductor-aroma.light 3.8.0
miniasm 0.2
miniasm 0.2_r137
miniasm 0.2_r159
miniasm 0.2_r168
bioconductor-affyplm 1.54.0
peddy 0.0.4
peddy 0.1.1
peddy 0.1.2
peddy 0.1.3
peddy 0.2.0
peddy 0.2.2
peddy 0.2.5
peddy 0.2.9
peddy 0.3.1
bioconductor-bsgenome 1.38.0
bioconductor-bsgenome 1.40.1
bioconductor-bsgenome 1.42.0
bioconductor-bsgenome 1.44.2
bioconductor-bsgenome 1.46.0
dxua 1.5.11
dxua 1.5.26
mykrobe 0.5.6
bioconductor-bicare 1.34.0
bioconductor-bicare 1.36.0
perl-date-format 2.30
bioconductor-m3drop 1.2.0
bioconductor-m3drop 1.4.0
collectl 4.0.4
perl-warnings-register 1.03
bioconductor-pics 2.20.0
bioconductor-pics 2.22.0
repenrich 1.2
fuma 3.0.3
fuma 3.0.5
ucsc-stringify 324
ucsc-stringify 332
ucsc-stringify 357
perl-math-random 0.72
perl-math-vecstat 0.08
bioconductor-spktools 1.32.0
bioconductor-spktools 1.34.0
bioconductor-ggtree 1.10.0
bioconductor-ggtree 1.2.12
bioconductor-ggtree 1.4.20
bioconductor-ggtree 1.8.2
toil 3.10.0
toil 3.10.0a1
toil 3.11.0
toil 3.11.0a1
toil 3.13.0a1
toil 3.2.0a2
toil 3.3.0a1
toil 3.4.0a1
toil 3.5.0a1
toil 3.6.0
toil 3.7.0a
toil 3.8.0a1
toil 3.9.0a1
perl-perl-version 1.013
ucsc-psltobed 324
ucsc-psltobed 332
ucsc-psltobed 357
limix 0.7.12
perl-text-ansitable 0.48
nucleoatac 0.3.1
nucleoatac 0.3.4
perl-gd 2.56
ucsc-maffrag 324
ucsc-maffrag 357
ucsc-crtreesearchbed 324
ucsc-crtreesearchbed 332
ucsc-crtreesearchbed 357
mobster 0.2.1
mobster 0.2.2
mobster 0.2.3.1
bioconductor-starank 1.18.0
bioconductor-starank 1.20.0
bioconductor-beachmat 1.0.1
bioconductor-sigpathway 1.44.1
bioconductor-sigpathway 1.46.0
ucsc-ameme 332
ucsc-ameme 357
bioconductor-plw 1.36.0
bioconductor-plw 1.38.0
perl-bioperl-run 1.006900
bioconductor-matter 1.2.0
bioconductor-matter 1.4.1
pp 1.6.4
pp 1.6.5
bioconductor-org.dm.eg.db 3.2.3
bioconductor-org.dm.eg.db 3.3.0
bioconductor-org.dm.eg.db 3.4.0
bioconductor-org.dm.eg.db 3.4.1
bioconductor-org.dm.eg.db 3.4.2
bioconductor-org.dm.eg.db 3.5.0
w4mclassfilter 0.98.0
w4mclassfilter 0.98.1
w4mclassfilter 0.98.2
w4mclassfilter 0.98.3
w4mclassfilter 0.98.6
breakseq2 2.2
arem 1.0.1
bioconductor-lpsymphony 1.2.0
bioconductor-lpsymphony 1.4.1
bioconductor-lpsymphony 1.6.0
minepy 1.2.0
bowtie2 2.2.4
bowtie2 2.2.5
bowtie2 2.2.6
bowtie2 2.2.7
bowtie2 2.2.8
bowtie2 2.3.0
bowtie2 2.3.2
bowtie2 2.3.3.1
bowtie2 2.3.4
perl-statistics-r 0.34
python-hppy 0.9.6
bioconductor-annotationdbi 1.30.1
bioconductor-annotationdbi 1.32.0
bioconductor-annotationdbi 1.32.2
bioconductor-annotationdbi 1.32.3
bioconductor-annotationdbi 1.34.4
bioconductor-annotationdbi 1.36.0
bioconductor-annotationdbi 1.36.2
bioconductor-annotationdbi 1.38.0
bioconductor-annotationdbi 1.38.2
bioconductor-annotationdbi 1.40.0
ucsc-bedweedoverlapping 324
ucsc-bedweedoverlapping 332
ucsc-bedweedoverlapping 357
deepmedic 0.5.4
deepmedic 0.6
export2graphlan 0.19
bioconductor-motifdb 1.16.0
bioconductor-motifdb 1.18.0
bioconductor-motifdb 1.20.0
hubward-all 0.2.1
gocr 0.50
perl-sanger-cgp-vagrent 3.2.0
bioconductor-fithic 1.2.0
bioconductor-fithic 1.4.0
flask-admin 1.4.0
scikits-datasmooth 0.7.0
perl-bit-vector 7.4
bioconductor-chipcomp 1.0.0
bioconductor-chipcomp 1.6.0
bioconductor-chipcomp 1.8.0
bioconductor-tssi 1.22.0
bioconductor-tssi 1.24.0
bioconductor-spem 1.16.0
bioconductor-spem 1.18.0
perl-archive-zip 1.55
perl-params-check 0.38
hicup 0.5.10
hicup 0.5.9
perl-heap-simple-perl 0.14
metacluster 5.1
sprinkles 0.4.6
gqt 1.1.3
ucsc-maffetch 324
ucsc-maffetch 357
rna-seqc 1.1.8
perl-pcap 1.11.1
ucsc-qacagplift 324
ucsc-qacagplift 332
ucsc-qacagplift 357
perl-xml-sax-writer 0.56
perl-getopt-argvfile 1.11
python-consensuscore 1.0.0
python-consensuscore 1.0.2
ucsc-maffilter 324
ucsc-maffilter 357
mosaik 2.2.26
perl-graphviz 2.20
perl-pod-parser 1.63
ansible 1.9.4
r-psych 1.5.8
r-psych 1.7.8
scala 2.11.8
r-coloc 2.3_1
bioconductor-acgh 1.54.0
bioconductor-acgh 1.56.0
bioconductor-chemminer 2.28.3
bioconductor-chemminer 2.30.0
perl-bio-cigar 1.01
perl-test-nowarnings 1.04
cmfinder 0.2
cmfinder 0.4.1.9
svtyper 0.0.2
svtyper 0.0.4
svtyper 0.1.1
svtyper 0.1.4
targetfinder 1.7
r-rphylip 0.1_23
ntcard 1.0.0
socksipy-branch 1.01
dsh-bio 1.0
bpipe 0.9.9.2
pyomo 4.1.10527
bioconductor-annotationfilter 1.0.0
bioconductor-annotationfilter 1.2.0
perl-test-classapi 1.06
kmc 2.3.0
kmc 3.0.1
randfold 2.0.1
perl-extutils-makemaker 6.66
perl-extutils-makemaker 7.24
perl-file-find 1.27
ucsc-faalign 332
ucsc-faalign 357
perl-json-maybexs 1.003008
rnashapes 2.1.6
rnashapes 3.3.0
obitools 1.0.010
obitools 1.2.10
obitools 1.2.11
r-grimport 0.9_0
bioconductor-derfinderhelper 1.10.0
bioconductor-derfinderhelper 1.12.0
mdasim 1.2
locarna 1.8.10
locarna 1.8.11
locarna 1.8.12
locarna 1.8.7
locarna 1.8.9
locarna 1.9.0
locarna 1.9.1
locarna 1.9.2
bioconductor-qvalue 2.10.0
bioconductor-qvalue 2.2.2
bioconductor-qvalue 2.4.2
bioconductor-qvalue 2.6.0
bioconductor-qvalue 2.8.0
svgwrite 1.1.6
perl-hpc-runner-slurm 2.57
perl-hpc-runner-slurm 2.58
bx-python 0.7.1
bx-python 0.7.2
bx-python 0.7.3
bx-python 0.7.4
junit-xml 1.7
dlcpar 1.0
bioconductor-cntools 1.32.0
bioconductor-cntools 1.34.0
bioconductor-sights 1.2.0
bioconductor-sights 1.4.0
bmtagger 3.101
ucsc-bedcommonregions 324
ucsc-bedcommonregions 332
ucsc-bedcommonregions 357
gubbins 2.2.1
gubbins 2.3.1
bioconductor-rtcgatoolbox 2.6.0
bioconductor-rtcgatoolbox 2.8.0
perl-test-warnings 0.021
metaseq 0.5.6
perl-math-round 0.07
r-wgcna 1.51
r-wgcna 1.61
bioconductor-drimseq 1.6.0
perl-xml-filter-buffertext 1.01
proot 5.1.0
perl-file-sort 1.01
r-tfmpvalue 0.0.6
sourmash 1.0
sourmash 2.0.0a1
sourmash 2.0.0a2
ale 20160127
ucsc-bedpileups 324
ucsc-bedpileups 332
ucsc-bedpileups 357
perl-file-copy-recursive 0.38
ensembl-vep 88
ensembl-vep 88.10
ensembl-vep 88.8
ensembl-vep 88.9
ensembl-vep 89.1
ensembl-vep 89.4
ensembl-vep 89.7
ensembl-vep 90.1
ensembl-vep 90.10
ensembl-vep 90.3
ensembl-vep 90.5
ensembl-vep 90.6
ensembl-vep 90.7
ensembl-vep 90.9
ensembl-vep 91.0
ensembl-vep 91.1
afterqc 0.9.6
hisat2 2.0.0beta
hisat2 2.0.1beta
hisat2 2.0.2beta
hisat2 2.0.3beta
hisat2 2.0.4
hisat2 2.0.5
hisat2 2.1.0
bioconductor-ncigraph 1.24.0
bioconductor-ncigraph 1.26.0
snns 4.3
percolator 3.0
percolator 3.1
perl-pod-coverage-trustpod 0.100003
bioconductor-egseadata 1.6.0
r-pamr 1.55
mirtop 0.1.8a0
edlib 1.0.0
edlib 1.1.2
edlib 1.2.0
edlib 1.2.1
perl-statistics-lite 3.62
biolite-tools 0.4.0
perl-xml-namespacesupport 1.11
galaxy_sequence_utils 1.0.0
galaxy_sequence_utils 1.0.1
galaxy_sequence_utils 1.1.0
galaxy_sequence_utils 1.1.1
galaxy_sequence_utils 1.1.2
tirmite 1.1.0
mysql-connector-c 6.1.6
pacbio_falcon 052016
ucsc-bedsort 324
ucsc-bedsort 332
ucsc-bedsort 357
r-scrm 1.6.0_2
r-scrm 1.7.2_0
bioconductor-affypdnn 1.50.0
bioconductor-affypdnn 1.52.0
musicc 1.0.1
musicc 1.0.2
perl-math-combinatorics 0.09
cgat-scripts 0.2.6
cgat-scripts 0.2.7
cgat-scripts 0.3.0
cgat-scripts 0.3.1
cgat-scripts 0.3.2
ngseqbasic 2.0.1
r-chbutils 0.1_2015_12_21
autodock-vina 1.1.2
bioconductor-ihw 1.2.0
bioconductor-ihw 1.4.0
bioconductor-ihw 1.6.0
ucsc-farandomize 332
ucsc-farandomize 357
verifybamid 1.1.3
bcftools 1.2
bcftools 1.3
bcftools 1.3.1
bcftools 1.4
bcftools 1.4.1
bcftools 1.5
bcftools 1.6
perl-moosex-getopt 0.71
bioconductor-mpfe 1.12.0
bioconductor-mpfe 1.14.0
bioconductor-motiv 1.30.0
bioconductor-motiv 1.32.0
bioconductor-motiv 1.34.0
bio_hansel 0.1.0
bio_hansel 0.2.0
bio_hansel 1.1.0
bio_hansel 1.1.1
perl-db-file 1.835
bioconductor-org.cf.eg.db 3.4.1
bioconductor-org.cf.eg.db 3.4.2
bioconductor-org.cf.eg.db 3.5.0
bioconductor-semdist 1.10.0
bioconductor-semdist 1.12.0
toulligqc 0.5
ucsc-htmlcheck 357
ucsc-bedtopsl 324
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snakemake 3.10.0
snakemake 3.10.1
snakemake 3.10.2
snakemake 3.11.0
snakemake 3.11.1
snakemake 3.11.2
snakemake 3.12.0
snakemake 3.13.0
snakemake 3.13.2
snakemake 3.13.3
snakemake 3.4.2
snakemake 3.5.1
snakemake 3.5.2
snakemake 3.5.3
snakemake 3.5.4
snakemake 3.5.5
snakemake 3.6.0
snakemake 3.6.1
snakemake 3.7.0
snakemake 3.7.1
snakemake 3.8.0
snakemake 3.8.1
snakemake 3.8.2
snakemake 3.9.0
snakemake 3.9.1
snakemake 4.0.0
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snakemake 4.2.0
snakemake 4.3.0
snakemake 4.3.1
snakemake 4.4.0
bioconductor-bayseq 2.10.0
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bioconductor-pathview 1.16.5
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fermi 1.1_r751_beta
bioconductor-santa 2.14.0
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mygene 2.2.0
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searchgui 2.1.4
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bioconductor-noiseq 2.18.0
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quake 0.3.5
bioconductor-flowbeads 1.16.0
bioconductor-gcrma 2.48.0
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libsequence 1.9.0
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bioconductor-splinter 1.2.0
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intervals 0.6.0
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glimmer 3.02
bioconductor-multidataset 1.4.0
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shape_it 1.0.1
bioconductor-gseabase 1.32.0
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bioconductor-gseabase 1.40.0
jamm 1.0.7.2
jamm 1.0.7.4
jamm 1.0.7.5
bioconductor-ternarynet 1.20.0
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pandaseq 2.10
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pbcommand 0.2.17
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ucsc-mafaddqrows 324
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bioconductor-phosphonormalizer 1.2.0
vawk 0.0.2
perl-html-parser 3.72
bioconductor-illuminamousev2.db 1.26.0
bioconductor-michip 1.30.0
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eta 0.9.7
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rnftools 0.3.0.2
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bioconductor-jaspar2016 1.4.0
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rename 1.600
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perl-lwp-protocol-https 6.06
bioconductor-segmentseq 2.10.0
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perl-text-tabs 2013.0523
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primer3-py 0.5.1
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bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene 3.4.0
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bioconductor-hilbertvis 1.32.0
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bioconductor-hilbertvis 1.36.0
bioconductor-globalseq 1.4.2
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concoct 0.4.0
bioconductor-annaffy 1.48.0
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mawk 1.3.4
bioconductor-rtca 1.28.0
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perl-module-runtime 0.014
rtg-tools 3.6
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rtg-tools 3.8.4
bioconductor-cghregions 1.34.0
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bioconductor-promise 1.28.0
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bamm 1.7.3
rapsearch 2.24
stellar 1.4.9
doit 0.29.0
bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene 3.2.2
protrac 2.1
protrac 2.3.1
flask-bower 1.2.1
fcp 1.0.7
cmv 1.0.2
cmv 1.0.5
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perl-perl-osnames 0.11
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last 490
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ucsc-bedclip 332
ucsc-bedclip 357
graftm 0.10.1
mappy 2.2
mappy 2.4
mappy 2.5
mappy 2.6
mappy 2.7
ucsc-genepredtobed 324
ucsc-genepredtobed 332
ucsc-genepredtobed 357
ucsc-hgloadoutjoined 357
deeptools 1.5.8.2
deeptools 1.5.9.1
deeptools 2.0.0
deeptools 2.0.1
deeptools 2.1.0
deeptools 2.2.0
deeptools 2.2.1