Available packagesΒΆ

Package Version License Linux OSX
tesseract 3.04.01
perl-heap-simple-xs 0.10
perl-moosex-types 0.46
r-rniftyreg 2.2.0
r-compute.es 0.2_4
perl-path-tiny 0.076
perl-path-tiny 0.082
r-globaloptions 0.0.8
minced 0.2.0
perl-file-find 1.27
bioconductor-rrho 1.16.0
perl-dbi 1.634
perl-dbi 1.636
ucsc-bigwigcorrelate 324
ucsc-bigwigcorrelate 332
r-delaporte 3.0.0
bioconductor-txdb.celegans.ucsc.ce6.ensgene 3.2.2
bioconductor-targetscore 1.14.0
bowtie 1.0.0
bowtie 1.1.2
bowtie 1.2.0
bowtie 1.2.1.1
bioconductor-aims 1.8.0
fastqc 0.10.1
fastqc 0.11.2
fastqc 0.11.3
fastqc 0.11.4
fastqc 0.11.5
perl-xml-sax-writer 0.56
perl-xml-namespacesupport 1.11
metaseq-all 0.5.6
xxmotif 1.6
rscape 0.2.1
rscape 0.3.1
rscape 0.6.1
bioconductor-rsvsim 1.16.0
mintmap 1.0
bioconductor-vsn 3.38.0
extract_genome_region 0.0.3
r-matrixeqtl 2.1.1
hmmer 2.3.2
hmmer 3.1b2
qiimetomaaslin 1.1.0
rseg 0.4.9
ucsc-twobitmask 324
ucsc-twobitmask 332
perl-html-tree 5.03
bioconductor-sights 1.2.0
crisper_recognition_tool 1.2
dominate 2.1.16
xtandem 15.12.15.2
bioconductor-stategra 1.10.0
perl-moosex-app-role-log4perl 0.03
sourmash 1.0
sourmash 2.0.0a1
sparse-neighbors-search 0.2.3
sparse-neighbors-search 0.3
r-readmzxmldata 2.8.1
perl-file-slurper 0.008
graphmap 0.22.1
graphmap 0.3.1p1
graphmap 0.4.0
graphmap 0.5.2
maker 2.31.9
simplejson 3.8.1
pacbio_falcon 052016
mosdepth 0.1.1
mosdepth 0.1.3
mosdepth 0.1.4a
mosdepth 0.1.5
mosdepth 0.1.6
mosdepth 0.1.7
gdk-pixbuf 2.32.2
jq 1.5
bioconductor-metacca 1.4.0
embassy-phylip 3.69.650
gecode 4.4.0
gecode 5.0.0
perl-scalar-util-numeric 0.40
ftputil 3.2
perl-cpan-meta-validator 2.140640
cgat-scripts-nosetests 0.0.1
cgat-scripts-nosetests 0.0.2
cgat-scripts-nosetests 0.0.3
cgat-scripts-nosetests 0.0.4
bioconductor-mlp 1.24.0
fastq-screen 0.11.1
fastq-screen 0.5.2
perl-io-prompt 0.997004
cmfinder 0.2
pbbam 0.1
perl-task-weaken 1.04
bioconductor-made4 1.44.0
discovardenovo 52488
nanosim v1.0.1
nanosim v1.2.0
r-gpseq 0.5
bioconductor-cancermutationanalysis 1.18.0
perl-gdtextutil 0.86
fqtools 2.0
ibdseq r1206
r-sartools 1.2.0
r-sartools 1.3.2
r-sartools 1.4.1
atropos 1.0.23
atropos 1.1.10
atropos 1.1.2
atropos 1.1.4
atropos 1.1.5
bioconductor-fastseg 1.20.0
openbabel 2.3.2
openbabel 2.3.90dev7d621d9
openbabel 2.4.1
ig-checkflowtypes 1.0.0
skewer 0.1.126
skewer 0.2.2
kraken-ea 0.10.5ea.3
r-spp 1.11
r-spp 1.13
r-spp 1.14
r-spp 1.14post
bioconductor-viper 1.10.0
phylotoast 1.3.0
phylotoast 1.4.0rc2
perl-array-compare 2.11
bioconductor-genomicalignments 1.10.0
bioconductor-genomicalignments 1.6.0
bioconductor-genomicalignments 1.6.1
bioconductor-genomicalignments 1.6.3
bioconductor-genomicalignments 1.8.4
perl-mldbm 2.05
plink 1.90b4
bioconductor-affy 1.48.0
bioconductor-affy 1.50.0
r-funr 0.2.0
bioconductor-outlierd 1.40.0
monovar v0.0.1
pypore 0.0.5.dev20160304220337
pypore 0.0.6.dev20161116235131
perl-math-random 0.72
seqmagick 0.6.1
oncofuse 1.1.0
pypeflow 0.1.0
perl-importer 0.024
perl-test2-suite 0.000061
msgf_plus 1.0.0
msgf_plus 2016.10.26
msgf_plus 2017.07.21
cityhash 0.1.5
cityhash 0.1.7
qsignature 0.1pre
prinseq 0.20.4
bioconductor-flowcl 1.10.0
bioconductor-flowcl 1.12.0
bioconductor-flowcl 1.14.0
minimap2 2.0.r191
minimap2 2.1.1
minimap2 2.1.r311
r-cimpl 1.1
gemini 0.17.3dev0
gemini 0.17.3dev1
gemini 0.18.0
gemini 0.18.1
gemini 0.18.2
gemini 0.18.3
gemini 0.18a
gemini 0.19.0
gemini 0.19.1
gemini 0.19.2a
gemini 0.20.0
gemini 0.20.0a0
gemini 0.20.1
ruffus 2.6.3
joblib 0.9.3
r-openxlsx 4.0.17
bctools 0.2.1
gimmemotifs 0.10.0
gimmemotifs 0.10.0b1
gimmemotifs 0.10.0b4
gimmemotifs 0.10.0b5
gimmemotifs 0.10.0b6
gimmemotifs 0.8.9.1
gimmemotifs 0.9.0.3
gimmemotifs 0.9.0.4
gimmemotifs 0.9.0.5
gimmemotifs 0.9.0.6
r-dpeak 2.0.1
bioconductor-mzid 1.14.0
cluster-picker 1.2.3
ucsc-bedweedoverlapping 324
ucsc-bedweedoverlapping 332
gsort 0.0.1
gsort 0.0.2
bioconductor-anota 1.24.0
vcfkit 0.0.4
jbrowse 1.12.1
jbrowse 1.12.3
bioconductor-mirnatap 1.10.0
ucsc-pslsort 324
ucsc-pslsort 332
spine 0.2.2
bioconductor-summarizedexperiment 1.0.0
bioconductor-summarizedexperiment 1.0.1
bioconductor-summarizedexperiment 1.0.2
bioconductor-summarizedexperiment 1.2.3
bioconductor-summarizedexperiment 1.4.0
bpp-phyl 2.2.0
extract_fullseq 3.101
bmtagger 3.101
fastq-and-furious 0.1.0
r-readbrukerflexdata 1.8.2
bioconductor-stringdb 1.16.0
wgs-assembler 8.3
perl-io-stringy 2.111
r-permute 0.8_4
seqkit 0.3.4.1
seqkit 0.4.3
seqkit 0.4.4
seqkit 0.4.5
seqkit 0.5.0
seqkit 0.5.1
seqkit 0.5.2
seqkit 0.5.3
seqkit 0.5.4
seqkit 0.5.5
seqkit 0.6.0
seqkit 0.7.0
seqkit 0.7.1
htslib 1.2.1
htslib 1.3
htslib 1.3.1
htslib 1.3.2
htslib 1.4
htslib 1.4.1
htslib 1.5
peptide-shaker 1.1.3
peptide-shaker 1.11.0
peptide-shaker 1.13.3
peptide-shaker 1.13.6
peptide-shaker 1.14.4
peptide-shaker 1.14.6
peptide-shaker 1.15.0
peptide-shaker 1.15.1
peptide-shaker 1.16.0
peptide-shaker 1.16.13
peptide-shaker 1.16.3
peptide-shaker 1.16.4
wham 1.7.0.162
wham 1.7.0.307
wham 1.7.0.311
bioconductor-gagedata 2.10.0
bioconductor-gagedata 2.8.0
irfinder 1.2.2
perl-module-build-tiny 0.039
r-rgraphics 2.0_14
ucsc-ameme 332
bioconductor-org.hs.eg.db 3.2.3
bioconductor-org.hs.eg.db 3.3.0
ucsc-netclass 332
gatk4 4.0a1.2.7.2
gatk4 4.0b1
gatk4 4.0b2
gatk4 4.0b3
gatk4 4.0b4
gatk4 4.0b5
transabyss 1.5.4
r-matlab 1.0.2
ipython-cluster-helper 0.5.0
ipython-cluster-helper 0.5.1
ipython-cluster-helper 0.5.2
ipython-cluster-helper 0.5.3
ipython-cluster-helper 0.5.4
ipython-cluster-helper 0.5.5
ipython-cluster-helper 0.5.6
r-maxlik 1.3_4
perl-data-walk 2.01
ucsc-bigwigtobedgraph 324
ucsc-bigwigtobedgraph 332
r-dendextend 1.1.2
muse 1.0.rc
perl-scope-guard 0.21
bioconductor-heatplus 2.20.0
r-gamlss 5.0_0
bioconductor-scater 1.4.0
rainbow 2.0.4
graph_embed 1.0
perl-timedate 2.30
dammit 0.3
metametamerge 1.0
metametamerge 1.1
geodl 1.0b1
wgsim 1.0
ray 2.3.1
bioconductor-multiscan 1.36.0
bioconductor-pepxmltab 1.10.0
fasta3 36.3.8
r-prroc 1.1
bcbio-prioritize 0.0.2
bcbio-prioritize 0.0.4
bcbio-prioritize 0.0.5
bcbio-prioritize 0.0.6
bcbio-prioritize 0.0.7
bcbio-prioritize 0.0.8
rdock 2013.1
bioconductor-plw 1.36.0
ucsc-bigbedinfo 324
ucsc-bigbedinfo 332
star 2.4.2a
star 2.5.0a
star 2.5.0b
star 2.5.0c
star 2.5.1b
star 2.5.2a
star 2.5.2b
star 2.5.3a
fastaindex 0.11c
bwa 0.5.9
bwa 0.6.2
bwa 0.7.12
bwa 0.7.13
bwa 0.7.15
bwa 0.7.16
bwa 0.7.3a
bwa 0.7.8
perl-class-data-inheritable 0.08
bioconductor-ebimage 4.12.2
bioconductor-ebimage 4.13.0
bioconductor-nudge 1.42.0
perl-test-unit-lite 0.1202
represent 1.5.1
taco v0.7.0
beagle-lib 2.1.2
perl-regexp-common 2016060801
singularity 2.3
indelfixer 1.1
bioconductor-ipo 1.0.0
pytest-marks 0.4
blast 2.2.21
blast 2.2.31
blast 2.5.0
blast 2.6.0
bioconductor-affycomp 1.52.0
sickle 0.5
blasr_libcpp 1.1
delly 0.7.2
delly 0.7.6
delly 0.7.7
bioconductor-rbcbook1 1.44.0
stringtie 0.97
stringtie 1.0.1
stringtie 1.0.3
stringtie 1.0.4
stringtie 1.1.0
stringtie 1.1.1
stringtie 1.1.2
stringtie 1.2.0
stringtie 1.2.2
stringtie 1.2.3
stringtie 1.2.4
stringtie 1.3.0
stringtie 1.3.3
perl-b-hooks-endofscope 0.21
bioconductor-repitools 1.20.0
prodigal 2.6.2
prodigal 2.6.3
ucsc-pslrecalcmatch 324
ucsc-pslrecalcmatch 332
primer3-py 0.5.1
primer3-py 0.5.4
perl-text-tabs-wrap 2013.0523
r-gam 1.14
bioconductor-annmap 1.18.0
openslide 3.4.1
bioconductor-multtest 2.26.0
bioconductor-multtest 2.28.0
ucsc-chainantirepeat 324
ucsc-chainantirepeat 332
bioconductor-teqc 3.16.0
ucsc-rowstocols 324
ucsc-rowstocols 332
nanomath 0.12.5
bioconductor-a4core 1.24.0
phizz 0.0.1
r-rseis 3.5_2
bioconductor-rots 1.0.0
perl-log-any 1.045
bioconductor-rrdp 1.10.0
bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene 3.2.2
r-aroma.core 3.0.0
bioconductor-biomformat 1.0.2
bioconductor-biomformat 1.2.0
edlib 1.0.0
edlib 1.1.2
edlib 1.2.0
logbook 0.12.2
logbook 1.0.0
ucsc-pslhisto 324
ucsc-pslhisto 332
afterqc 0.9.6
osra 2.0.1
bamhash 1.0
bamhash 1.1
ucsc-fanoise 332
connor 0.5.1
perl-proc-fork 0.804
perl-path-class 0.36
baitfisher 1.0
obitools 1.0.010
obitools 1.2.10
obitools 1.2.11
backports.csv 1.0.1
perl-math-cdf 0.1
bioconductor-bsgenome.mmusculus.ucsc.mm9 1.4.0
perl-estscan2 2.1
pythonpy 0.4.2
pymzml 0.7.5
pymzml 0.7.7
pymzml 0.7.8
bioconductor-txdb.drerio.ucsc.danrer10.refgene 3.4.0
ucsc-ratotab 324
ucsc-ratotab 332
plastid 0.4.7
r-base64 1.1
nanofilt 1.1.3
nanofilt 1.1.4
nanofilt 1.2.0
bioconductor-biovizbase 1.18.0
bioconductor-biovizbase 1.20.0
geneimpacts 0.0.4
geneimpacts 0.0.5
geneimpacts 0.0.7
geneimpacts 0.0.8
geneimpacts 0.0.9
geneimpacts 0.1.0
geneimpacts 0.1.1
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geneimpacts 0.1.3
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geneimpacts 0.2.0
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geneimpacts 0.3.1
geneimpacts 0.3.3
wtforms-components 0.10.0
bioconductor-ternarynet 1.20.0
perl-tie-cache 0.21
perl-bloom-faster 1.7
r-proxy 0.4_16
ucsc-genepredtogtf 332
r-viridis 0.3.1
perl-parse-recdescent 1.967013
phyloflash 2.0beta6
r-plotrix 3.6_1
r-plotrix 3.6_4
igdiscover 0.3
igdiscover 0.4
igdiscover 0.5
igdiscover 0.6.0
igdiscover 0.7.0
igdiscover 0.8.0
bioconductor-plgem 1.48.0
bioconductor-ringo 1.38.0
bioconductor-annotationdbi 1.30.1
bioconductor-annotationdbi 1.32.0
bioconductor-annotationdbi 1.32.2
bioconductor-annotationdbi 1.32.3
bioconductor-annotationdbi 1.34.4
bioconductor-annotationdbi 1.36.0
bioconductor-annotationdbi 1.36.2
bioconductor-annotationdbi 1.38.0
ucsc-splitfilebycolumn 324
ucsc-splitfilebycolumn 332
ucsc-bigwigmerge 324
ucsc-bigwigmerge 332
r-ahocorasicktrie 0.1.0
bio-hansel 0.1.0
breseq 0.29.0
gdal 1.9.2
r-gsmoothr 0.1.7
samtools 0.1.16
samtools 0.1.17
samtools 0.1.18
samtools 0.1.19
samtools 1.0
samtools 1.1
samtools 1.2
samtools 1.3
samtools 1.3.1
samtools 1.4
samtools 1.4.1
samtools 1.5
glob2 0.4.1
parafly r2013_01_21
schavott 0.2
schavott 0.3
schavott 0.4.1
perl-error 0.17024
soapec 2.03
snakemake 3.10.0
snakemake 3.10.1
snakemake 3.10.2
snakemake 3.11.0
snakemake 3.11.1
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snakemake 3.12.0
snakemake 3.13.0
snakemake 3.13.2
snakemake 3.13.3
snakemake 3.4.2
snakemake 3.5.1
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snakemake 3.5.3
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snakemake 3.5.5
snakemake 3.6.0
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ucsc-chainprenet 324
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r-png 0.1.7
perl-sub-install 0.928
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bioconductor-mmnet 1.13.0
asciigenome 0.2.0
asciigenome 0.6.4
asciigenome 1.0.0
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maaslin 0.04
parallel 20150922
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parallel 20170422
bedtools 2.16.2
bedtools 2.17.0
bedtools 2.19.1
bedtools 2.20.1
bedtools 2.22
bedtools 2.23.0
bedtools 2.24.0
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bioconductor-mulcom 1.26.0
perl-text-tabs 2013.0523
bioconductor-psicquic 1.14.0
bumbershoot 3_0_10158
bumbershoot 3_0_10246
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lefse 1.0.7
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bioconductor-masigpro 1.46.0
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cgat-scripts 0.2.6
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ucsc-pslcdnafilter 324
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ucsc-facount 332
bioconductor-casper 2.10.0
perl-getopt-argvfile 1.11
r-rematch2 2.0.1
libmagic 5.25
planemo 0.23.0
planemo 0.29.1
planemo 0.33.2
planemo 0.34.1
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planemo 0.40.1
biogridpy 0.1.1
bioconductor-aroma.light 3.4.0
bioconductor-pannbuilder 1.40.0
bioconductor-starank 1.18.0
ale 20160127
trackhub 0.1.2
ebisearch 0.0.2
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bioconductor-polyfit 1.10.0
fadapa 0.3.1
oligotyping 2.0
oligotyping 2.1
python-omero 5.2.7
python-omero 5.2.8
python-omero 5.3.0
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python-omero 5.3.2
python-omero 5.3.3
bioconductor-ogsa 1.6.0
mobster 0.2.1
mobster 0.2.2
mobster 0.2.3.1
ncbi-genome-download 0.1.8
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ant 1.10.0
ant 1.9.6
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cnvkit 0.7.10
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raxml 7.3.0
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flaimapper 2.0.0
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bioconductor-geoquery 2.36.0
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r-biganalytics 1.1.14
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ococo 0.1.2.4
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seqprep 1.1
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snippy 2.9
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perl-xml-simple 2.22
racon 0.5.0
shorah 1.0.0
shorah 1.1.0
crossmap 0.2.1
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bioconductor-parody 1.34.0
ucsc-chainswap 324
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bioconductor-flowfp 1.32.0
r-segmented 0.5_1.4
qorts 1.1.8
ucsc-psltobigpsl 324
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bioconductor-mipp 1.48.0
chanjo 3.1.1
chanjo 3.3.0
bioconductor-r4rna 1.4.0
bioconductor-sspa 2.16.0
myriad 0.1.3
gnu-wget 1.18
panoct 3.23
metameta 1.0
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metameta 1.1.1
perl-test-eol 1.6
fastool 0.1.4
perl-math-combinatorics 0.09
bwakit 0.7.12
r-ff 2.2_13
bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene 3.4.0
r-argparse 1.0.1
genblastg 1.38
bioconductor-swath2stats 1.6.1
bioconductor-methylseekr 1.16.0
bioconductor-methylpipe 1.10.0
perl-integer 1.01
ucsc-parasync 324
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bioconductor-paircompviz 1.14.0
perl-convert-binary-c 0.78
itsx 1.1b
bioconductor-methtargetedngs 1.8.0
sim4db 2008
bioconductor-sispa 1.6.0
ucsc-crtreesearchbed 324
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agg 0.3.5
r-aroma.affymetrix 3.0.0
perl-module-scandeps 1.23
perl-test-fatal 0.014
retry_decorator 1.1.0
metavelvet 1.1.01
metavelvet 1.2.02
pymot 13.09.2016
r-globals 0.6.0
r-globals 0.7.1
elasticluster 0.1.3bcbio
jamm 1.0.7.2
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bioconductor-roleswitch 1.14.0
perl-tie-hash-indexed 0.05
gfapy 1.0.0rc10
gfapy 1.0.0rc9
spectra-cluster-cli 1.0.1
antismash 4.0.1
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