Available packagesΒΆ

Package Version License Linux OSX
r-ash 1.0_15
gcs-oauth2-boto-plugin 1.9
iva 1.0.6
iva 1.0.7
optitype 1.2
optitype 1.2.1
r-mmgenome 0.6.3
toil 3.2.0a2
toil 3.3.0a1
toil 3.4.0a1
toil 3.5.0a1
toil 3.6.0
toil 3.7.0a
perl-statistics-descriptive 3.0609
perl-statistics-descriptive 3.0612
r-sparql 1.16
randfold 2.0.1
r-ampvis 1.27.0
perl-bio-featureio 1.6.905
perl-env-path 0.19
r-gplots 2.17.0
bgt r277
bgt r283
carna 1.3.1
carna 1.3.2
carna 1.3.3
paladin 1.3.1
perl-cpan-meta-check 0.012
braker 1.9
ucsc-psltopslx 324
ucsc-psltopslx 332
perl-archive-tar 2.18
bioconductor-cummerbund 2.12.1
bioconductor-cummerbund 2.16.0
bioconductor-cummerbund 2.8.2
qsignature 0.1pre
ucsc-ratolines 324
ucsc-ratolines 332
elasticluster 0.1.3bcbio
ucsc-pslpostarget 324
ucsc-pslpostarget 332
httpretty 0.8.10
tssar 1.0.1
perl-archive-zip 1.55
metavelvet-annois 0.2.01
ucsc-fatotwobit 324
ucsc-fatotwobit 332
bioconductor-cghcall 2.34.0
bioconductor-cghcall 2.34.1
perl-math-random 0.72
msgf_plus 1.0.0
msgf_plus 2016.10.26
pyliftover 0.3
ucsc-autoxml 332
phylowgs 20150714
perl-file-fetch 0.48
ucsc-axtsort 332
bioconductor-massspecwavelet 1.40.0
perl-io-uncompress-bunzip2 2.064
ucsc-getrna 332
samtools 0.1.16
samtools 0.1.17
samtools 0.1.18
samtools 0.1.19
samtools 1.0
samtools 1.1
samtools 1.2
samtools 1.3
samtools 1.3.1
samtools 1.4
eden 2.0
perl-net-http 6.09
intervals 0.6.0
perl-gdtextutil 0.86
pymummer 0.10.1
pymummer 0.6.1
pymummer 0.8.1
pymummer 0.9.0
r-argparser 0.4
ucsc-bigwigtobedgraph 324
ucsc-bigwigtobedgraph 332
pytest-cov 2.2.0
pytest-cov 2.4.0
r-funr 0.2.0
deeptools 2.0.0
deeptools 2.0.1
deeptools 2.1.0
deeptools 2.2.0
deeptools 2.2.1
deeptools 2.2.2
deeptools 2.2.3
deeptools 2.2.4
deeptools 2.3.1
deeptools 2.3.2
deeptools 2.3.3
deeptools 2.3.4
deeptools 2.3.5
deeptools 2.3.6
deeptools 2.4.0
deeptools 2.4.1
deeptools 2.4.2
deeptools 2.4.3
deeptools 2.5.0
plastid 0.4.7
r-patpro 1.1.0
wtforms-components 0.10.0
pylibseq 0.1.8
pylibseq 0.1.9.post0
zeroc-ice 3.6.3
ucsc-bigwigcat 324
ucsc-bigwigcat 332
dextractor 1.0p1
smashbenchmarking 1.0.1
r-r.cache 0.12.0
skewer 0.1.126
skewer 0.2.2
ddocent 2.1
ddocent 2.2.13
ddocent 2.2.15
ddocent 2.2.16
ddocent 2.2.4
ddocent 2.2.7
ddocent 2.2.8
r-segmented 0.5_1.4
popt 1.16
perl-app-cpanminus 1.7039
r-cimpl 1.1
orfm 0.6.1
perl-text-diff 1.44
ucsc-genepredcheck 332
perl-array-compare 2.11
r-truncnorm 1.0_7
r-sets 1.0_16
r-proj4 1.0_8
myriad 0.1.3
perl-tie-hash-indexed 0.05
r-outliers 0.14
cromwell 0.19.4
cromwell 0.21
cromwell 0.22
cromwell 0.23
cromwell 0.24
cromwell 0.25
cromwell 0.26
bioconductor-fastseg 1.20.0
r-r.utils 2.2.0
r-r.utils 2.5.0
ucsc-getrnapred 332
angsd 0.910
pilon 1.16
pilon 1.17
pilon 1.18
pilon 1.19
pilon 1.20
pilon 1.22
bioconductor-bumphunter 1.10.0
bioconductor-bumphunter 1.12.0
r-pracma 1.8.8
perl-hpc-runner-command 3.0.1
perl-hpc-runner-command 3.1.1
r-knitr 1.12.3
rascaf 20161129
bio-vcf 0.9.0
bio-vcf 0.9.1
bio-vcf 0.9.2
snippy 2.9
snippy 3.0
snippy 3.1
blast-legacy 2.2.22
r-ks 1.10.0
discovar 52488
pindel 0.2.5a7
pindel 0.2.5b8
bioconductor-bsgenome.mmusculus.ucsc.mm9 1.4.0
isodate 0.5.4
r-algdesign 1.1_7.3
perl-test2-suite 0.000061
perl-io-prompt 0.997004
ucsc-beditemoverlapcount 324
ucsc-beditemoverlapcount 332
ucsc-addcols 324
ucsc-addcols 332
flock 1.0
crispresso 1.0
impute2 2.3.2
sortedcontainers 1.5.3
ucsc-chaintoaxt 324
ucsc-chaintoaxt 332
perl-date-manip 6.57
r-dynamictreecut 1.63_1
gevent 1.0.2
gevent 1.1rc4
ucsc-faonerecord 332
ngmlr 0.2.2
ngmlr 0.2.3
r-gsalib 2.1
perl-xml-libxslt 1.94
perl-sub-exporter-progressive 0.001011
hubward-all 0.2.1
perl-estscan2 2.1
trinculo 0.96
r-reshape2 1.4.2
r-vgam 1.0_2
pbcore 1.2.10
perl-socket6 0.25
ucsc-avecols 332
perl-clone 0.38
intervaltree 2.1.0
bioconductor-geoquery 2.36.0
bioconductor-geoquery 2.38.4
python-hivclustering 1.2.3
ftputil 3.2
eta 0.9.7
bioconductor-ggbio 1.18.0
bioconductor-ggbio 1.18.1
bioconductor-ggbio 1.18.5
bioconductor-ggbio 1.20.2
perl-hpc-runner-slurm 2.57
perl-hpc-runner-slurm 2.58
ucsc-randomlines 324
ucsc-randomlines 332
primer3-py 0.5.1
tidyp 1.04
perl-base 2.22
velvet-sc 0.7.62
py2bit 0.1.0
py2bit 0.2.0
py2bit 0.2.1
ucsc-pslsort 324
ucsc-pslsort 332
r-dplyr 0.5.0
perl-proc-fork 0.804
p7zip 15.09
lrzip 0.621
r-survey 3.31_5
kmc 2.3.0
perl-path-tiny 0.076
perl-path-tiny 0.082
krona 2.5
krona 2.6
krona 2.6.1
krona 2.7
gdk-pixbuf 2.32.2
perl-file-details 0.003
rust-bio-tools 0.1.1
rust-bio-tools 0.1.2
guidescan 1.0
perl-file-next 1.16
metasv 0.4.0
jellyfish 1.1.11
jellyfish 2.2.3
jellyfish 2.2.6
hapbin 1.0.0
reago 1.1
bioconductor-flowdensity 1.6.0
xsv 0.10.3
xsv 0.9.8
r-idr 1.2
s3gof3r 0.5.0
clearcut 1.0.9
mbuffer 20160228
bioconductor-hpar 1.14.1
bioconductor-hpar 1.15.0
perl-test-more 1.001002
pyscaf 0.12a4
phylotoast 1.3.0
perl-regexp-common 2016060801
ucsc-facmp 332
peptide-shaker 1.1.3
peptide-shaker 1.11.0
peptide-shaker 1.13.3
peptide-shaker 1.13.6
peptide-shaker 1.14.4
peptide-shaker 1.14.6
peptide-shaker 1.15.0
peptide-shaker 1.15.1
peptide-shaker 1.16.0
peptide-shaker 1.16.3
peptide-shaker 1.16.4
perl-safe 2.37
r-snowfall 1.84_6.1
rdp-readseq 2.0.2
ppanini 0.6.2
ppanini 0.6.4
star-fusion 0.4.0
star-fusion 0.5.3
star-fusion 0.5.4
bioconductor-chipseeker 1.10.0
bioconductor-chipseeker 1.6.6
r-getoptlong 0.1.0
perl-compress-raw-zlib 2.069
wdltool 0.6
wdltool 0.9
perl-digest-sha 5.88
graphlite 1.0.5
antarna 2.0.1.2
sortmerna 2.0
sortmerna 2.1b
perl-moose 2.1804
scoop 0.7.1.1
r-futile.options 1.0.0
ucsc-psltobigpsl 324
ucsc-psltobigpsl 332
flask-bower 1.2.1
bcl2fastq-nextseq 0.1.0
ra 0.9
perl-file-spec 3.48_01
denovogear 1.1.1
pipmir 1.1
ensembl-vep 88
ensembl-vep 88.8
perl-scalar-list-utils 1.42
perl-scalar-list-utils 1.45
fastdtw 0.2.0
r-ahocorasicktrie 0.1.0
shape_it 1.0.1
ucsc-fafilter 332
r-ada 2.0_5
r-r.oo 1.19.0
r-r.oo 1.21.0
pyteomics 3.4
perl-devel-checkbin 0.04
sbt 0.13.12
metilene 0.2.6
inheritance 0.0.3
inheritance 0.0.4
inheritance 0.0.5
inheritance 0.0.6
inheritance 0.0.7
inheritance 0.0.9
inheritance 0.1.2
stringtie 0.97
stringtie 1.0.1
stringtie 1.0.3
stringtie 1.0.4
stringtie 1.1.0
stringtie 1.1.1
stringtie 1.1.2
stringtie 1.2.0
stringtie 1.2.2
stringtie 1.2.3
stringtie 1.2.4
stringtie 1.3.0
stringtie 1.3.3
r-gprofiler 0.6.1
vsearch 1.10.2
vsearch 1.11.1
vsearch 1.9.5
vsearch 1.9.7
vsearch 2.0.0
vsearch 2.0.2
vsearch 2.0.3
vsearch 2.3.2
vsearch 2.3.4
vsearch 2.4.0
perl-perlio-utf8_strict 0.006
perl-extutils-helpers 0.022
stride 1.0
esmre 0.3.1
pycluster 1.52
tn93 1.0.2
tn93 1.0.4
genblasta 1.0.4
ucsc-bedtobigbed 323
ucsc-bedtobigbed 324
ucsc-bedtobigbed 332
perl-moosex-fileattribute 0.02
lsd 2.2.3
perl-list-util 1.38
r-googlevis 0.5.10
pytest-mpl 0.5
perl-hpc-runner 2.48
ucsc-twobitmask 324
ucsc-twobitmask 332
dwgsim 1.1.11
cgat-scripts-devel 0.2.5
perl-io-interactive 1.021
nextflow 0.19.3
nextflow 0.21.3
nextflow 0.23.4
nextflow 0.24.1
nextflow 0.24.2
gclib 0.0.1
nudup 2.2_post2016104
nudup 2.3.1
nudup 2.3.2
r-maldiquantforeign 0.10
r-multicool 0.1_9
python-magic 0.4.10
python-magic 0.4.12
python-magic 0.4.6
intervalstats 1.01
osra 2.0.1
perl-module-build 0.4214
perl-clone-pp 1.06
r-dt 0.1
r-dt 0.2
perl-file-find 1.27
ws4py 0.2.2
ws4py 0.3.2
r-nor1mix 1.2_1
botocore 1.3.6
perl-namespace-clean 0.27
vcfanno 0.0.10
vcfanno 0.0.11
vcfanno 0.1.0
vcfanno 0.1.1
vcfanno 0.2.0
vcfanno 0.2.1
vcfanno 0.2.2
vcfanno 0.2.4
meryl 2013
multiprocess 0.70.4
r-viridis 0.3.1
python-cluster 1.3.3
bioconductor-motifdb 1.16.0
perl-http-message 6.11
proteowizard 3_0_9992
yaha 0.1.83
perl-io-uncompress-rawinflate 2.064
perl-crypt-openssl-rsa 0.28
ucsc-sqltoxml 324
ucsc-sqltoxml 332
perl-text-format 0.59
perl-ole-storage_lite 0.19
r-seqinr 3.1_3
ucsc-bedweedoverlapping 324
ucsc-bedweedoverlapping 332
bumbershoot 3_0_10158
bumbershoot 3_0_10246
bioconductor-pcamethods 1.64.0
r-circlize 0.3.2
r-circlize 0.3.3
r-robustbase 0.92_6
cgat-report 0.3.7
cgat-report 0.7.6.1
cap3 10.2011
svtyper 0.0.2
svtyper 0.0.4
svtyper 0.1.1
ecoprimers 1.0
ibdne 04Sep15.e78
ucsc-coltransform 332
python-bioext 0.17.4
bd2k-python-lib 1.13.dev14
bd2k-python-lib 1.14a1.dev28
bd2k-python-lib 1.14a1.dev29
bd2k-python-lib 1.14a1.dev33
bd2k-python-lib 1.14a1.dev37
perl-par-dist 0.49
fastaindex 0.11c
gb_taxonomy_tools 1.0.0
agg 0.3.5
ntcard 1.0.0
cansnper 1.0.8
msstitch 1.0
msstitch 2.2
msstitch 2.3
tetoolkit 1.5.1
ucsc-bigwiginfo 324
ucsc-bigwiginfo 332
hubward 0.2.0
hubward 0.2.1
hubward 0.2.2
py2neo 3.1.2
bioconductor-biocparallel 1.2.22
bioconductor-biocparallel 1.4.0
bioconductor-biocparallel 1.4.3
bioconductor-biocparallel 1.5.0
bioconductor-biocparallel 1.6.6
r-globals 0.6.0
r-globals 0.7.1
ucsc-gtftogenepred 324
ucsc-gtftogenepred 332
pandaseq 2.10
pandaseq 2.11
cyvcf2 0.2.0
cyvcf2 0.2.2
cyvcf2 0.2.3
cyvcf2 0.2.4
cyvcf2 0.2.5
cyvcf2 0.2.6
cyvcf2 0.2.8
cyvcf2 0.3.0
cyvcf2 0.3.2
cyvcf2 0.4.0
cyvcf2 0.4.1
cyvcf2 0.4.2
cyvcf2 0.5.0
cyvcf2 0.5.1
cyvcf2 0.5.3
cyvcf2 0.5.5
cyvcf2 0.6.5
cyvcf2 0.6.6a
cyvcf2 0.7.2
tclap 1.2.1
wub 0.1.0
r-plotrix 3.6_1
r-plotrix 3.6_4
perl-http-date 6.02
pdfkit 0.5.0
rdptools 2.0.2
bioconductor-kegggraph 1.28.0
bioconductor-kegggraph 1.30.0
fgbio 0.1.2a
fgbio 0.1.3a
r-sleuth 0.0.1
r-sleuth 0.28.0
platypus-variant 0.8.1
perl-module-metadata 1.000019
pacbio_falcon 052016
junit-xml 1.7
perl-math-cdf 0.1
mathstats 0.2.4
ucsc-qactowig 324
ucsc-qactowig 332
ucsc-nibsize 324
ucsc-nibsize 332
intarna 1.2.5
intarna 2.0.0
intarna 2.0.1
intarna 2.0.2
perl-moosex-app-role-log4perl 0.03
dkfz-bias-filter 1.2.3a
bowtie 1.0.0
bowtie 1.1.2
bowtie 1.2.0
cwl2wdl 0.1dev37
cwl2wdl 0.1dev44
perl-statistics-r 0.34
bioconductor-clusterprofiler 2.4.3
bioconductor-clusterprofiler 3.0.4
bioconductor-clusterprofiler 3.0.5
entrez-direct 4.00
entrez-direct 5.80
goleft 0.1.0
goleft 0.1.1
goleft 0.1.10
goleft 0.1.11
goleft 0.1.12
goleft 0.1.13
goleft 0.1.14
goleft 0.1.2
goleft 0.1.3
goleft 0.1.4
goleft 0.1.6
goleft 0.1.8
goleft 0.1.9
perl-xml-dom 1.45
bioconductor-degreport 1.7.2
bioconductor-degreport 1.8.2
perl-io-stringy 2.111
treetime 0.1
percolator 3.0
percolator 3.1
somatic-sniper 1.0.5.0
perl-text-parsewords 3.29
ucsc-tdbquery 324
ucsc-tdbquery 332
r-robustrankaggreg 1.1
vphaser2 2.0
pyomo 4.1.10527
perl-io-sessiondata 1.03
perl-test-yaml 1.06
perl-data-uuid 1.221
perl-par-packer 1.036
plant_tribes_assembly_post_processor 0.1
plant_tribes_assembly_post_processor 0.2
plant_tribes_assembly_post_processor 0.3
plant_tribes_assembly_post_processor 0.4
bioconductor-impute 1.44.0
bioconductor-impute 1.46.0
ale 20160127
ucsc-bigwigaverageoverbed 324
ucsc-bigwigaverageoverbed 332
ucsc-chainmergesort 324
ucsc-chainmergesort 332
ucsc-pslfilter 324
ucsc-pslfilter 332
pycli 2.0.3
treebest 1.9.2_ep78
perl-sanger-cgp-battenberg 1.4.1
gvcftools 0.17.0
ucsc-bedsort 324
ucsc-bedsort 332
perl-yaml-libyaml 0.63
pancake 1.1.2
r-spdep 0.6_8
bioconductor-ringo 1.38.0
soapsplice 1.10
bioconductor-pcaexplorer 2.0.0
r-svgui 0.9_55
perl-sub-identify 0.12
sra-tools 2.6.2
sra-tools 2.6.3
sra-tools 2.7.0
sra-tools 2.8.0
sra-tools 2.8.1
bioconductor-biocstyle 1.8.0
bioconductor-biocstyle 2.0.2
bioconductor-biocstyle 2.0.3
perl-html-treebuilder-xpath 0.14
bioconductor-genomicalignments 1.10.0
bioconductor-genomicalignments 1.6.0
bioconductor-genomicalignments 1.6.1
bioconductor-genomicalignments 1.6.3
bioconductor-genomicalignments 1.8.4
scala 2.11.8
ucsc-pslcat 324
ucsc-pslcat 332
pasta 0.2
vcftools 0.1.11
vcftools 0.1.14
r-rtsne 0.13
perl-sanger-cgp-allelecount 2.1.2
perl-class-std-fast 0.0.8
perl-module-implementation 0.09
bioconductor-summarizedexperiment 1.0.0
bioconductor-summarizedexperiment 1.0.1
bioconductor-summarizedexperiment 1.0.2
bioconductor-summarizedexperiment 1.2.3
bioconductor-summarizedexperiment 1.4.0
genometools 1.2.1
doit 0.29.0
perl-list-moreutils 0.413
ucsc-chainnet 324
ucsc-chainnet 332
whatshap 0.11
whatshap 0.12
whatshap 0.13
whatshap 0.9
r-pore 0.16
gdal 1.9.2
metacluster 5.1
ped_parser 1.6.5
pbbam 0.1
perl-libwww-perl 6.15
soapdenovo2-gapcloser 1.12
perl-pod-simple-text 3.28
bowtie2 2.2.4
bowtie2 2.2.5
bowtie2 2.2.6
bowtie2 2.2.7
bowtie2 2.2.8
bowtie2 2.3.0
r-qqman 0.1.2
estscan 3.0
crossmap 0.2.1
crossmap 0.2.2
ucsc-pslselect 324
ucsc-pslselect 332
sentieon 201603.02
sentieon 201606
sentieon 201611
sentieon 201611.03
multiqc-bcbio 0.1.0
multiqc-bcbio 0.1.1
multiqc-bcbio 0.1.2
multiqc-bcbio 0.1.3
multiqc-bcbio 0.1.4
multiqc-bcbio 0.1.5
multiqc-bcbio 0.1.6
multiqc-bcbio 0.1.7
multiqc-bcbio 0.1.8
multiqc-bcbio 0.1.9
multiqc-bcbio 0.2.0dev
clustalo 1.2.3
dinopy 1.2.0
dinopy 1.2.1
dinopy 2.0.0
kronik 2.20
ficus 0.3
perl-sub-install 0.928
kraken-all 0.10.5beta
kraken-all 0.10.6_eaf8fb68
ucsc-blasttopsl 324
ucsc-blasttopsl 332
bioconductor-organismdbi 1.12.0
bioconductor-organismdbi 1.12.1
bioconductor-organismdbi 1.14.1
kallisto 0.42.3
kallisto 0.42.4
kallisto 0.43.0
r-discriminer 0.1_29
r-rann 2.5
bmfilter 3.101
suds-jurko 0.6
r-gdtools 0.1.4
iqtree 1.5.3
perl-array-utils 0.5
perl-dist-checkconflicts 0.11
andi 0.10
yanc 0.3.3
ucsc-qacagplift 324
ucsc-qacagplift 332
tedna 1.2.2
asciigenome 0.2.0
asciigenome 0.6.4
asciigenome 1.0.0
asciigenome 1.1.0
asciigenome 1.2.0
azure-cli 0.10.3
seqprep 1.1
r-rocr 1.0_7
mafft 7.221
mafft 7.305
r-findpython 1.0.1
setuptools_scm 1.11.1
ete3 3.0.0b35
r-delaporte 3.0.0
arvados-python-client 0.1.20160301181511
arvados-python-client 0.1.20160318153100
arvados-python-client 0.1.20160331153549
arvados-python-client 0.1.20160412193510
arvados-python-client 0.1.20160517202250
arvados-python-client 0.1.20161031135838
arvados-python-client 0.1.20161123074954
repeatmodeler 1.0.8
clustalw 2.1
perl-xml-libxml 2.0124
perl-file-find-rule 0.34
tbb 4.4_20150728
perl-cpan-shell 5.5004
perl-extutils-config 0.008
ucsc-nettobed 324
ucsc-nettobed 332
perl-json-xs 2.34
gocr 0.50
pysam 0.10.0
pysam 0.11.0
pysam 0.11.1
pysam 0.8.3
pysam 0.8.4
pysam 0.8.4pre0
pysam 0.9.0
pysam 0.9.1
pysam 0.9.1.4
rapclust 0.1.1
rapclust 0.1.2
ucsc-axtswap 332
novoalign 3.03.02
novoalign 3.04.04
novoalign 3.06.05
novoalign 3.07.00
perl-xml-parser-lite 0.721
mgkit 0.2.2
mgkit 0.3.0
perl-termreadkey 2.32
r-scatterplot3d 0.3_36
rnaz 2.1
koeken 0.2.6
bioconductor-motifstack 1.18.0
r-cghflasso 0.2_1
soapdenovo-trans 1.04
bioconductor-genefilter 1.50.0
bioconductor-genefilter 1.51.0
bioconductor-genefilter 1.52.0
bioconductor-genefilter 1.52.1
bioconductor-genefilter 1.54.2
bioconductor-genefilter 1.56.0
qiimetomaaslin 1.1.0
perl-module-scandeps 1.23
canvas 1.25.0
art 2016.06.05
art 3.11.14
art 3.19.15
starseqr 0.5.0
targetfinder 1.7
java-jdk 6.0.77
java-jdk 7.0.91
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