recipe bgreat2

BGREAT2 is a read mapping tool for NGS sequencing data that align reads on a de Bruijn graph. Preliminary version described at https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1103-9 and used in Bcool a short read corrector (https://arxiv.org/abs/1711.03336)

Homepage

https://github.com/Malfoy/BGREAT2

License

AGPL-3.0

Recipe

/bgreat2/meta.yaml

package bgreat

(downloads) docker_bgreat

Versions

2.0.0-1, 2.0.0-0

Depends
  • libgcc-ng >=7.3.0

  • libstdcxx-ng >=7.3.0

  • zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bgreat

and update with:

conda update bgreat

or use the docker container:

docker pull quay.io/biocontainers/bgreat:<tag>

(see bgreat/tags for valid values for <tag>)