recipe bioconductor-abadata

Averaged gene expression in human brain regions from Allen Brain Atlas

Homepage

https://bioconductor.org/packages/3.10/data/experiment/html/ABAData.html

License

GPL (>= 2)

Recipe

/bioconductor-abadata/meta.yaml

Provides the data for the gene expression enrichment analysis conducted in the package ‘ABAEnrichment’. The package includes three datasets which are derived from the Allen Brain Atlas: (1) Gene expression data from Human Brain (adults) averaged across donors, (2) Gene expression data from the Developing Human Brain pooled into five age categories and averaged across donors and (3) a developmental effect score based on the Developing Human Brain expression data. All datasets are restricted to protein coding genes.

package bioconductor-abadata

(downloads) docker_bioconductor-abadata

Versions

1.16.0-0, 1.14.0-2, 1.14.0-1, 1.12.0-0, 1.10.0-0, 1.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-abadata

and update with:

conda update bioconductor-abadata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-abadata:<tag>

(see bioconductor-abadata/tags for valid values for <tag>)