recipe bioconductor-ampliqueso

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Homepage

https://bioconductor.org/packages/3.8/bioc/html/ampliQueso.html

License

GPL-2

Recipe

/bioconductor-ampliqueso/meta.yaml

package bioconductor-ampliqueso

(downloads) docker_bioconductor-ampliqueso

Versions

1.20.0-0

Depends bioconductor-deseq

>=1.34.0,<1.35.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-rnaseqmap

>=2.40.0,<2.41.0

Depends bioconductor-variantannotation

>=1.28.0,<1.29.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-doparallel

Depends r-foreach

Depends r-ggplot2

Depends r-gplots

Depends r-knitr

Depends r-rgl

Depends r-samr

Depends r-statmod

Depends r-xtable

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ampliqueso

and update with:

conda update bioconductor-ampliqueso

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ampliqueso:<tag>

(see bioconductor-ampliqueso/tags for valid values for <tag>)