recipe bioconductor-arrayexpresshts

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ArrayExpressHTS.html

License

Artistic License 2.0

Recipe

/bioconductor-arrayexpresshts/meta.yaml

package bioconductor-arrayexpresshts

Versions

1.34.2-0, 1.32.1-0, 1.32.0-0

Depends

• bioconductor-biobase >=2.44.0,<2.45.0

• bioconductor-biocgenerics >=0.30.0,<0.31.0

• bioconductor-biomart >=2.40.0,<2.41.0

• bioconductor-biostrings >=2.52.0,<2.53.0

• bioconductor-deseq >=1.36.0,<1.37.0

• bioconductor-edger >=3.26.0,<3.27.0

• bioconductor-genomicranges >=1.36.0,<1.37.0

• bioconductor-iranges >=2.18.0,<2.19.0

• bioconductor-rhtslib >=1.16.0,<1.17.0

• bioconductor-rsamtools >=2.0.0,<2.1.0

• bioconductor-shortread >=1.42.0,<1.43.0

• libgcc-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-bitops

• r-hmisc

• r-r2html

• r-rcolorbrewer

• r-rjava

• r-sampling

• r-sendmailr

• r-snow

• r-svmisc

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayexpresshts

and update with:

conda update bioconductor-arrayexpresshts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayexpresshts:<tag>

(see bioconductor-arrayexpresshts/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-arrayexpresshts/README.html)