recipe bioconductor-arrayexpresshts

ArrayExpress High Throughput Sequencing Processing Pipeline

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ArrayExpressHTS.html

License

Artistic License 2.0

Recipe

/bioconductor-arrayexpresshts/meta.yaml

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

package bioconductor-arrayexpresshts

Versions

1.44.0-0,  1.42.0-0,  1.36.0-0,  1.34.2-0,  1.32.1-0,  1.32.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-rhtslib >=1.26.0,<1.27.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-shortread >=1.52.0,<1.53.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.4.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

• r-bitops

• r-hmisc

• r-r2html

• r-rcolorbrewer

• r-rjava

• r-sampling

• r-sendmailr

• r-snow

• r-svmisc

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayexpresshts

and update with:

conda update bioconductor-arrayexpresshts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayexpresshts:<tag>

(see bioconductor-arrayexpresshts/tags for valid values for <tag>)

Download stats

Link to this page

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