- recipe bioconductor-arrayexpresshts
ArrayExpress High Throughput Sequencing Processing Pipeline
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/ArrayExpressHTS.html
- License:
Artistic License 2.0
- Recipe:
RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets
- package bioconductor-arrayexpresshts¶
-
- Versions:
1.44.0-1
,1.44.0-0
,1.42.0-0
,1.36.0-0
,1.34.2-0
,1.32.1-0
,1.32.0-0
- Depends:
bioconductor-biobase
>=2.54.0,<2.55.0
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-edger
>=3.36.0,<3.37.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rhtslib
>=1.26.0,<1.27.0
bioconductor-rsamtools
>=2.10.0,<2.11.0
bioconductor-shortread
>=1.52.0,<1.53.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-arrayexpresshts
and update with:
conda update bioconductor-arrayexpresshts
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-arrayexpresshts:<tag>
(see bioconductor-arrayexpresshts/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-arrayexpresshts/README.html)