recipe bioconductor-arrayexpresshts

RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ArrayExpressHTS.html

License

Artistic License 2.0

Recipe

/bioconductor-arrayexpresshts/meta.yaml

package bioconductor-arrayexpresshts

(downloads) docker_bioconductor-arrayexpresshts

Versions

1.32.1-0, 1.32.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-deseq

>=1.34.0,<1.35.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-shortread

>=1.40.0,<1.41.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-bitops

Depends r-hmisc

Depends r-r2html

Depends r-rcolorbrewer

Depends r-rjava

Depends r-sampling

Depends r-sendmailr

Depends r-snow

Depends r-svmisc

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-arrayexpresshts

and update with:

conda update bioconductor-arrayexpresshts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-arrayexpresshts:<tag>

(see bioconductor-arrayexpresshts/tags for valid values for <tag>)