-
recipe
bioconductor-arrayexpresshts¶ RNA-Seq processing pipeline for public ArrayExpress experiments or local datasets
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/ArrayExpressHTS.html
- License
Artistic License 2.0
- Recipe
-
package
bioconductor-arrayexpresshts¶ 
- Versions
1.32.1-0, 1.32.0-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biomart
>=2.38.0,<2.39.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-deseq
>=1.34.0,<1.35.0
- Depends bioconductor-edger
>=3.24.0,<3.25.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-rsamtools
>=1.34.0,<1.35.0
- Depends bioconductor-shortread
>=1.40.0,<1.41.0
- Depends libgcc-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-bitops
- Depends r-hmisc
- Depends r-r2html
- Depends r-rcolorbrewer
- Depends r-rjava
- Depends r-sampling
- Depends r-sendmailr
- Depends r-snow
- Depends r-svmisc
- Depends r-xml
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-arrayexpresshts
and update with:
conda update bioconductor-arrayexpresshts
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-arrayexpresshts:<tag>
(see bioconductor-arrayexpresshts/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-arrayexpresshts/README.html)