recipe bioconductor-aspediafi

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Homepage

https://bioconductor.org/packages/3.12/bioc/html/ASpediaFI.html

License

GPL-3

Recipe

/bioconductor-aspediafi/meta.yaml

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

package bioconductor-aspediafi

Versions

1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocparallel >=1.24.0,<1.25.0

• bioconductor-biomart >=2.46.0,<2.47.0

• bioconductor-fgsea >=1.16.0,<1.17.0

• bioconductor-genomeinfodb >=1.26.0,<1.27.0

• bioconductor-genomicalignments >=1.26.0,<1.27.0

• bioconductor-genomicfeatures >=1.42.0,<1.43.0

• bioconductor-genomicranges >=1.42.0,<1.43.0

• bioconductor-gviz >=1.34.0,<1.35.0

• bioconductor-iranges >=2.24.0,<2.25.0

• bioconductor-ivas >=2.10.0,<2.11.0

• bioconductor-limma >=3.46.0,<3.47.0

• bioconductor-rsamtools >=2.6.0,<2.7.0

• bioconductor-rtracklayer >=1.50.0,<1.51.0

• bioconductor-s4vectors >=0.28.0,<0.29.0

• bioconductor-summarizedexperiment >=1.20.0,<1.21.0

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-drawr

• r-e1071

• r-ggplot2

• r-igraph

• r-matrix

• r-mgsz

• r-reshape2

• r-rocr

• r-scales

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspediafi

and update with:

conda update bioconductor-aspediafi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspediafi:<tag>

(see bioconductor-aspediafi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aspediafi/README.html)