recipe bioconductor-aspediafi

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/ASpediaFI.html

License:

GPL-3

Recipe:

/bioconductor-aspediafi/meta.yaml

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

package bioconductor-aspediafi

Versions:

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-fgsea >=1.20.0,<1.21.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-genomicalignments >=1.30.0,<1.31.0

• bioconductor-genomicfeatures >=1.46.0,<1.47.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-gviz >=1.38.0,<1.39.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-ivas >=2.14.0,<2.15.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-rsamtools >=2.10.0,<2.11.0

• bioconductor-rtracklayer >=1.54.0,<1.55.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-drawr

• r-e1071

• r-ggplot2

• r-igraph

• r-matrix

• r-mgsz

• r-reshape2

• r-rocr

• r-scales

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-aspediafi

and update with:

conda update bioconductor-aspediafi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspediafi:<tag>

(see bioconductor-aspediafi/tags for valid values for <tag>)

Download stats

Link to this page

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