recipe bioconductor-aspediafi

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ASpediaFI.html

License

GPL-3

Recipe

/bioconductor-aspediafi/meta.yaml

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

package bioconductor-aspediafi

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocparallel >=1.22.0,<1.23.0

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-fgsea >=1.14.0,<1.15.0

• bioconductor-genomeinfodb >=1.24.0,<1.25.0

• bioconductor-genomicalignments >=1.24.0,<1.25.0

• bioconductor-genomicfeatures >=1.40.0,<1.41.0

• bioconductor-genomicranges >=1.40.0,<1.41.0

• bioconductor-gviz >=1.32.0,<1.33.0

• bioconductor-iranges >=2.22.0,<2.23.0

• bioconductor-ivas >=2.8.0,<2.9.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-rsamtools >=2.4.0,<2.5.0

• bioconductor-rtracklayer >=1.48.0,<1.49.0

• bioconductor-s4vectors >=0.26.0,<0.27.0

• bioconductor-summarizedexperiment >=1.18.0,<1.19.0

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-drawr

• r-e1071

• r-ggplot2

• r-igraph

• r-matrix

• r-mgsz

• r-reshape2

• r-rocr

• r-scales

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aspediafi

and update with:

conda update bioconductor-aspediafi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspediafi:<tag>

(see bioconductor-aspediafi/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aspediafi/README.html)