recipe bioconductor-aspediafi

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ASpediaFI.html

License:

GPL-3

Recipe:

/bioconductor-aspediafi/meta.yaml

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

package bioconductor-aspediafi

Versions:

1.11.0-0,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-biomart >=2.54.0,<2.55.0

• bioconductor-fgsea >=1.24.0,<1.25.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicalignments >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-gviz >=1.42.0,<1.43.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-ivas >=2.18.0,<2.19.0

• bioconductor-limma >=3.54.0,<3.55.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-drawr

• r-e1071

• r-ggplot2

• r-igraph

• r-matrix

• r-mgsz

• r-reshape2

• r-rocr

• r-scales

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-aspediafi

and update with:

conda update bioconductor-aspediafi

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aspediafi:<tag>

(see bioconductor-aspediafi/tags for valid values for <tag>)

Download stats

Link to this page

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[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aspediafi/README.html)