recipe bioconductor-atlasrdf

Query the Gene Expression Atlas RDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. Also contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

Homepage

http://bioconductor.org/packages/3.6/bioc/html/AtlasRDF.html

License

Apache License 2.0

Recipe

/bioconductor-atlasrdf/meta.yaml

Links

biotools: atlasrdf, doi: 10.1093/bioinformatics/btt765

package bioconductor-atlasrdf

(downloads) docker_bioconductor-atlasrdf

Versions

1.12.0-0, 1.11.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-atlasrdf

and update with:

conda update bioconductor-atlasrdf

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-atlasrdf:<tag>

(see bioconductor-atlasrdf/tags for valid values for <tag>)