recipe bioconductor-bigmemoryextras

An extension of the bigmemory package with added safety, convenience, and a factor class

Homepage

https://bioconductor.org/packages/3.11/bioc/html/bigmemoryExtras.html

License

Artistic-2.0

Recipe

/bioconductor-bigmemoryextras/meta.yaml

This package defines a "BigMatrix" ReferenceClass which adds safety and convenience features to the filebacked.big.matrix class from the bigmemory package. BigMatrix protects against segfaults by monitoring and gracefully restoring the connection to on-disk data and it also protects against accidental data modification with a filesystem-based permissions system. We provide utilities for using BigMatrix-derived classes as assayData matrices within the Biobase package's eSet family of classes. BigMatrix provides some optimizations related to attaching to, and indexing into, file-backed matrices with dimnames. Additionally, the package provides a "BigMatrixFactor" class, a file-backed matrix with factor properties.

package bioconductor-bigmemoryextras

(downloads) docker_bioconductor-bigmemoryextras

Versions

1.36.0-01.34.0-01.32.0-11.32.0-01.30.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-bigmemoryextras

and update with:

conda update bioconductor-bigmemoryextras

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-bigmemoryextras:<tag>

(see bioconductor-bigmemoryextras/tags for valid values for <tag>)