recipe bioconductor-birte

Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. biRte uses regulatory networks of TFs, miRNAs and possibly other factors, together with mRNA, miRNA and other available expression data to predict the relative influence of a regulator on the expression of its target genes. Inference is done in a Bayesian modeling framework using Markov-Chain-Monte-Carlo. A special feature is the possibility for follow-up network reverse engineering between active regulators.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/birte.html

License

GPL (>= 2)

Recipe

/bioconductor-birte/meta.yaml

Links

biotools: birte, doi: 10.1093/bioinformatics/btv379

package bioconductor-birte

(downloads) docker_bioconductor-birte

Versions

1.18.0-0, 1.16.0-0, 1.14.0-0, 1.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-birte

and update with:

conda update bioconductor-birte

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-birte:<tag>

(see bioconductor-birte/tags for valid values for <tag>)