recipe bioconductor-brainsaber

Brain Span Atlas in Biobase Expressionset R toolset

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/BrainSABER.html

License:

Artistic-2.0

Recipe:

/bioconductor-brainsaber/meta.yaml

The Allen Institute for Brain Science provides an RNA sequencing (RNA-Seq) data resource for studying transcriptional mechanisms involved in human brain development known as BrainSpan. BrainSABER is an R package that facilitates comparison of user data with the various developmental stages and brain structures found in the BrainSpan atlas by generating dynamic similarity heatmaps for the two data sets. It also provides a self-validating container for user data.

package bioconductor-brainsaber

Versions:

1.4.0-0,  1.2.0-0,  1.0.0-2,  1.0.0-1

Depends:

• bioconductor-biocfilecache >=2.2.0,<2.3.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-data.table

• r-lsa

• r-shiny

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-brainsaber

and update with:

conda update bioconductor-brainsaber

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-brainsaber:<tag>

(see bioconductor-brainsaber/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-brainsaber/README.html)