-
recipe
bioconductor-charm
¶ This package implements analysis tools for DNA methylation data generated using Nimblegen microarrays and the McrBC protocol. It finds differentially methylated regions between samples, calculates percentage methylation estimates and includes array quality assessment tools.
- Homepage
- License
LGPL (>= 2)
- Recipe
-
package
bioconductor-charm
¶ -
- Versions
2.28.0-0
- Depends
bioconductor-biobase >=2.42.0,<2.43.0
bioconductor-biostrings >=2.50.0,<2.51.0
bioconductor-bsgenome >=1.50.0,<1.51.0
bioconductor-genefilter >=1.64.0,<1.65.0
bioconductor-iranges >=2.16.0,<2.17.0
bioconductor-limma >=3.38.0,<3.39.0
bioconductor-oligo >=1.46.0,<1.47.0
bioconductor-oligoclasses >=1.44.0,<1.45.0
bioconductor-preprocesscore >=1.44.0,<1.45.0
bioconductor-siggenes >=1.56.0,<1.57.0
bioconductor-sva >=3.30.0,<3.31.0
r-base >=3.5.1,<3.5.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-charm
and update with:
conda update bioconductor-charm
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-charm:<tag>
(see bioconductor-charm/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-charm/README.html)