recipe bioconductor-clonotyper

High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop. The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/clonotypeR.html

License

file LICENSE

Recipe

/bioconductor-clonotyper/meta.yaml

Links

biotools: clonotyper

package bioconductor-clonotyper

(downloads) docker_bioconductor-clonotyper

Versions

1.22.0-1, 1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-clonotyper

and update with:

conda update bioconductor-clonotyper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-clonotyper:<tag>

(see bioconductor-clonotyper/tags for valid values for <tag>)