recipe bioconductor-deco

Decomposing Heterogeneous Cohorts using Omic Data Profiling

Homepage

https://bioconductor.org/packages/3.14/bioc/html/deco.html

License

GPL (>=3)

Recipe

/bioconductor-deco/meta.yaml

This package discovers differential features in hetero- and homogeneous omic data by a two-step method including subsampling LIMMA and NSCA. DECO reveals feature associations to hidden subclasses not exclusively related to higher deregulation levels.

package bioconductor-deco

Versions

1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

Depends

• bioconductor-annotationdbi >=1.56.0,<1.57.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biocstyle >=2.22.0,<2.23.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-made4 >=1.68.0,<1.69.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-ade4

• r-base >=4.1,<4.2.0a0

• r-cluster

• r-foreign

• r-gdata

• r-ggplot2

• r-gplots

• r-gridextra

• r-locfit

• r-rcolorbrewer

• r-reshape2

• r-scatterplot3d

• r-sfsmisc

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-deco

and update with:

conda update bioconductor-deco

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-deco:<tag>

(see bioconductor-deco/tags for valid values for <tag>)

Download stats

Link to this page

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