recipe bioconductor-diffloop

A suite of tools for subsetting, visualizing, annotating, and statistically analyzing the results of one or more ChIA-PET experiments or other assays that infer chromatin loops.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/diffloop.html

License

MIT + file LICENSE

Recipe

/bioconductor-diffloop/meta.yaml

Links

biotools: diffloop, doi: 10.1101/087338

package bioconductor-diffloop

(downloads) docker_bioconductor-diffloop

Versions

1.10.0-0, 1.8.0-0, 1.6.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-sushi

>=1.20.0,<1.21.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-dplyr

Depends r-foreach

Depends r-ggplot2

Depends r-locfit

Depends r-matrixstats

Depends r-pbapply

Depends r-plyr

Depends r-readr

Depends r-reshape2

Depends r-statmod

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-diffloop

and update with:

conda update bioconductor-diffloop

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-diffloop:<tag>

(see bioconductor-diffloop/tags for valid values for <tag>)