recipe bioconductor-doqtl

DOQTL is a quantitative trait locus (QTL) mapping pipeline designed for Diversity Outbred mice and other multi-parent outbred populations. The package reads in data from genotyping arrays and perform haplotype reconstruction using a hidden Markov model (HMM). The haplotype probabilities from the HMM are then used to perform linkage mapping. When founder sequences are available, DOQTL can use the haplotype reconstructions to impute the founder sequences onto DO genomes and perform association mapping.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/DOQTL.html

License

GPL-3

Recipe

/bioconductor-doqtl/meta.yaml

Links

biotools: doqtl

package bioconductor-doqtl

(downloads) docker_bioconductor-doqtl

Versions

1.18.0-0, 1.16.2-0, 1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-doqtl

and update with:

conda update bioconductor-doqtl

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-doqtl:<tag>

(see bioconductor-doqtl/tags for valid values for <tag>)