recipe bioconductor-edda

EDDA can aid in the design of a range of common experiments such as RNA-seq, Nanostring assays, RIP-seq and Metagenomic sequencing, and enables researchers to comprehensively investigate the impact of experimental decisions on the ability to detect differential abundance. This work was published on 3 December 2014 at Genome Biology under the title “The importance of study design for detecting differentially abundant features in high-throughput experiments” (http://genomebiology.com/2014/15/12/527).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/EDDA.html

License

GPL (>= 2)

Recipe

/bioconductor-edda/meta.yaml

Links

biotools: edda, doi: 10.1186/s13059-014-0527-7

package bioconductor-edda

(downloads) docker_bioconductor-edda

Versions

1.20.1-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends bioconductor-bayseq

>=2.16.0,<2.17.0

Depends bioconductor-deseq

>=1.34.0,<1.35.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-rcpp

>=0.10.4

Depends r-rocr

Depends r-snow

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-edda

and update with:

conda update bioconductor-edda

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-edda:<tag>

(see bioconductor-edda/tags for valid values for <tag>)