recipe bioconductor-genogam

This package allows statistical analysis of genome-wide data with smooth functions using generalized additive models based on the implementation from the R-package ‘mgcv’. It provides methods for the statistical analysis of ChIP-Seq data including inference of protein occupancy, and pointwise and region-wise differential analysis. Estimation of dispersion and smoothing parameters is performed by cross-validation. Scaling of generalized additive model fitting to whole chromosomes is achieved by parallelization over overlapping genomic intervals.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/GenoGAM.html

License

GPL-2

Recipe

/bioconductor-genogam/meta.yaml

Links

biotools: genogam, doi: 10.1093/bioinformatics/btx150

package bioconductor-genogam

(downloads) docker_bioconductor-genogam

Versions

2.0.2-0, 1.8.0-0, 1.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-genogam

and update with:

conda update bioconductor-genogam

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genogam:<tag>

(see bioconductor-genogam/tags for valid values for <tag>)