recipe bioconductor-ggbase

infrastructure

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GGBase.html

License

Artistic-2.0

Recipe

/bioconductor-ggbase/meta.yaml

Links

biotools: ggbase, doi: 10.1038/nmeth.3252

package bioconductor-ggbase

Versions

3.44.0-0, 3.42.0-0, 3.40.0-0

Depends

• bioconductor-annotationdbi >=1.44.0,<1.45.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biocgenerics >=0.28.0,<0.29.0

• bioconductor-genefilter >=1.64.0,<1.65.0

• bioconductor-genomicranges >=1.34.0,<1.35.0

• bioconductor-iranges >=2.16.0,<2.17.0

• bioconductor-limma >=3.38.0,<3.39.0

• bioconductor-s4vectors >=0.20.0,<0.21.0

• bioconductor-snpstats >=1.32.0,<1.33.0

• bioconductor-summarizedexperiment >=1.12.0,<1.13.0

• r-base >=3.5.1,<3.5.2.0a0

• r-digest

• r-matrix

Required By

• bioconductor-dsqtl

• bioconductor-ceu1kg

• bioconductor-hmyrib36

• bioconductor-ggdata

• bioconductor-yri1kgv

• bioconductor-ggtools

• bioconductor-ceuhm3

• bioconductor-ceu1kgv

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ggbase

and update with:

conda update bioconductor-ggbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggbase:<tag>

(see bioconductor-ggbase/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ggbase/README.html)