recipe bioconductor-ggbase

GGBase infrastructure for genetics of gene expression package GGtools

Homepage

https://bioconductor.org/packages/3.10/bioc/html/GGBase.html

License

Artistic-2.0

Recipe

/bioconductor-ggbase/meta.yaml

Links

biotools: ggbase, doi: 10.1038/nmeth.3252

infrastructure

package bioconductor-ggbase

Versions

3.48.0-0, 3.46.0-1, 3.44.0-0, 3.42.0-0, 3.40.0-0

Depends

• bioconductor-annotationdbi >=1.48.0,<1.49.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biocgenerics >=0.32.0,<0.33.0

• bioconductor-genefilter >=1.68.0,<1.69.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-snpstats >=1.36.0,<1.37.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-digest

• r-matrix

Required By

• bioconductor-ggtools

• bioconductor-yri1kgv

• bioconductor-hmyrib36

• bioconductor-ceu1kg

• bioconductor-ggdata

• bioconductor-ceu1kgv

• bioconductor-dsqtl

• bioconductor-ceuhm3

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ggbase

and update with:

conda update bioconductor-ggbase

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggbase:<tag>

(see bioconductor-ggbase/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ggbase/README.html)